LOC113527948


Basic Information

Item Value
gene id LOC113527948
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21288480 ~ 21293794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916148.2
CAAAAGAGGATGCCGTGAAACAAGTTCTCTTCAGAGAGGAATCAACAGCACAGGAGTGCAAGACGTTTGGGGGAAAAGAGGGAACCAAATACGAAGAGAGCAGAAGAACTTCATTTTCTAGAGAATCAAGATGCAGAACTTTACACTCCTCCTGCTGACCTTGTTGGTGGACTTCCTGTTAGCCGCCTCTGTGAACCCGTTAGCATCTCTGCCTCCTGTCACAAAAACCCGCATCCGCTACATTGGTGTAACTGATGACTACGATGATGAAGCAACTCCCAAGCCCAATTCAAAAGTCCCTGACCAGACTGGGGCCACTACCACTCATTTTACCCCTCAGGAGTGTGAATATGACCCTTGTGTGGTTCCCAAGGTTCCGTGTTCTGTGATCGCTGCCGAAACTAAGTGCTACTGTCCTGGAATTACTGGTCCGGATGAGCTGCCTGCAGCTCCAGAGATCAAAGAGTTGAAACAAGGAGCATCTGGACTGGTGGAGGTTCATTGGTGTGCACCACTATCAACTGTCTCCTACTACAAAGTAATCACAGAAGAAGGCCACGAGCCCCAAGTTTTCAACAATTCATCCCGTAGTGGGTCAGTGCAGGGAGTAAAGTTTGGGTCACGAGTTTGTGTGGTGGCAGGGAATAGCGTCGGATTCAGCACTGAATCAGAAATATCATGTGCTCTCTTTGAGCCTCATAAGTCCAATCATGTCCTCCAGATGTCAGGAGCCATTGCTGGGGGTATCGGCCTTTTGTTGCTGGCCTTGGCGTTGGCTTTGGTGTTGCTGTGGAGACGGAGGAGGGGTAGGAAGAATGGGAGCATGGACGGTGAGGGACTACGAAATCCATCCTACACCACAAATGAAACACTGTGATTGGATGGGATGAAATTTAAGGTACTCATTTAGTGGTGTAAGAGGCCAGATGATTCTAGTTAGTAGGCTCTGGGGAAGGCTCTGGAGGGTGGGGAAAGCTTGAGGACAATACAGACAAATCACTACCAAGAACCGAAACAAGACAGACTTCGTACACTATGGACAAAACATTGGGATTGGACAAGGTCAAATTTGAAGTCCTACCAAAGGAAAGTTGGACTGCAAGTAAGGACATTAACCACGTGAGACTCACCAGTCATCATATAAGGAtattgctacagcatacagcaaACTATGTCCTTGACTTTGAAGACATTAGCGTCTATAGTTATCAGGTGCTAGTTAATACAAGTAGGGAGAATACTGAAAAGACTGACATCTTAGTTTGGGTTCTCAAGAGGATAGCTTAGACCAGGGGTTTTCAAACTTATCcacaaagaggccacacctgattccacttgcTAAATGAGTTCATCTTGGGTTCCAATCAACTAACAAGTGTGCCTCCtgcttggctggaatgaaagtCTGCAGCCACATCAGCCCTTTGAGGATAAGTTTGCGAACCCCTGGCTTAGACCTTGCATCCTCATATGAAGATATCACCCCTAACACGCAAAGACAcaacaggggtggacaaatcagtagcctagCCACCTGGGACAAGCAGATATTTTGTCCAAGctatttgatttttattctctcttgcTAGCTCATGCAATCATctcaagagagaaaataaagacactagcCAGACTCAAATAATACTCTTTAGGTGTGATGCGAGAACAGAACACCACAGCTTATAGCCGAAATGTTGCTAATTTCTTGTCAAGGTTGCAATCACAATGCACTACATTAGAAACTCATTAGTTGAGACTAATTAGTTGGAAATTAATCACttaactagcaaactagctcTCCATGTATGTTATTATATTGCATTAGCTACTACTTTTTATTCTCATCAGTTTGGTTTCTAGACAACCAAACCTTGGGAGTACACTGGAGTTTTTACTTGCACAGTGGGCTAGCGaattaatttatgatttgtccacccctgcacAGATTTCCATAGTTATCATAATACCTAGTACTAGTTACGACCATAGGTATAAGTTAATGGAAAGAAGGTCTCTGGAGGTTATGGACAAATTACACAGTCTGTGGAAGTACTCTTTTTAACCATTCTAAGAGACTCCATTCATTGGGAATTGATGCACTGTAATCTGACCATGAAACAAGCTAGAGGGCAATATGCCTGTGGAGACTCAATCAGGACATGAAGGACAAATCAACATGGActattaaacagaaaaaagagcagCAGAAACGAACAGAGAACTGAAATAACCTAATGTACCCCTGTGTTAGCGACTGAACACTTAGCAACCCTGCTGAGAGCTAGTCAACATGTTACATaagtttaaaaagcattttaaattatAGTCTTTTTTACAGATTAATTCCACTAATGGTGCTGGAACATCAAGGAAGCCTGGAGCTTCTGTAAGGTTTTATAGATAAAGATTTAGTAATTCAGATATTTGTAGTTgcatataaatgttaattattactcatgctaattcttttttttaataataaaatcatttcttctGGAAA

Function

GO:

id name namespace
GO:0048368 lateral mesoderm development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916148.2 True 2500 mRNA 0.43 2 21288480 21293794

Neighbor

gene id symbol gene type direction distance location
f8 LOC108279904 coding upstream 61632 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 103630 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 206466 21047261 ~ 21082014 (+)
dele1 kiaa0141 coding upstream 244173 21035260 ~ 21044307 (+)
ankrd50 ankrd50 coding upstream 509248 20746708 ~ 20779232 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding downstream 7849 21301643 ~ 21328754 (+)
LOC113527892 NA coding downstream 87986 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 97109 21390903 ~ 21402724 (+)
LOC117598821 NA coding downstream 111546 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 160324 21454118 ~ 21480442 (+)
G214753 NA non-coding upstream 43695 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 102177 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 125176 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 130392 21144820 ~ 21158088 (+)
G214548 NA non-coding upstream 361802 20908828 ~ 20926678 (+)
LOC117598756 NA non-coding downstream 63056 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 74230 21368024 ~ 21368228 (+)
G214800 NA non-coding downstream 112579 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 120668 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 133180 21426974 ~ 21448404 (+)
nudt6 nudt6 other upstream 264393 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1115128 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1307100 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1335194 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1376748 19873076 ~ 19911732 (+)
hopx hopx other downstream 46622 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 188228 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 220779 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 352286 21646080 ~ 21649152 (+)
G215022 NA other downstream 369290 21663084 ~ 22000809 (+)

Expression


Co-expression Network