wnt9b (wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233)


Basic Information

Item Value
gene id wnt9b
gene name wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4982026 ~ 4991251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916160.2
CGCGATGAGGAGCAGCGCCGAGGCGAAGCCATGCGCGCCGGGACCGCCTGCCTGCTGCGACTCTCCGCGCTCTGCATCATCCTGCTCTCCCACGCAGCAGCAGCTTACTTCGGGCTCACGGGCCAGGAGCCCTTGGCTTTTTTGTCGAGCCCGTACAGCAGCGAGGCCGCAGGTGCGAAAGCGCACGTGAAACAGTGCGAGCAGATGACGCTGACGCGGCGCCAGAAGCGCGCGTGCCGCCGCGAGCCGGGCCTGGCGGAGACGCTGCGGGAGTCGGTGCGCCTCAGCCTGATGGAGTGCCGCTACCAGTTCCGCAATGAGCGCTGGAACTGCAGCATGGACGGCCGGGGAAGCCTCCTGAAGCGAGCTTTCAAGGAGACGGCCTTCCTCCTGGCAGTGTCCTCAGcagctctgtcacacacactggccaAAGCGTGCAGTTCGGGCCGTATGGAGCGCTGCACATGTGACGACACTCCGGGTCTGCAGCAGCGTGAAGCATGGCAGTGGGGAGTGTGTGGAGACAACCTGAAGTACAGCACCAGGTTCCTCAAGAAGTTCCTGGGCCAGAAACGGGTTAGCAAGGACCTGCGGGCTCAGGTCGATGCACATAATATAAACGCCGGCATCCGGGCTGTAAAGAACGGGCTGGTGACGACCTGCAAGTGTCACGGGGTCTCCGGCTCTTGTGCAGTACGCACATGCTGGAAACAGCTCTCGCCGTTTTATGTGACAGGCCAGCTGCTAAAGTATCGCTATGACACGGCCGTGCGCGCCCTCAGCATCACTAATGCAGCTACTGGTGACACCGAGCTGGCTGGTCCAGCACGCCGAGGTGACACGACTCCTCGGCCTCACCCCTCCGAGCTGGTGTTCCTAGAAGAGTCGCCTAGCTTCTGCCGCCCGTCTCGGTACTCGCCCGGTACAGCCGGCCGCTCCTGCGCCAAGGACACGAGCTGCAGCAGCCTTTGTTGCGGACGCGGCTACAACACAGCACTGCGCCTTGTCACACTGTCCTGCAACTGCCAGGTACGGTGGTGCTGCCACGTCGAGTGCCAGACCTGTGTCCGCGAAGAGGAGGTATACACTTGCAAGAAGCActgagagaaatagaaagagagtaAAGAGAAAAGGAGCTCCAAATGGCTCCAGTGGCTCAATATTCCTCCAATTCTGGCCTCTCAGACAAGTGTGGGCAAAGTTGGACAAAACCCCCCAAGGTATGGCTGTCCGAAATAGGAGTTGTGCTCCTGCTGTCATGGAAGAAAAAGGAACATTGTGGGAATTCCATGACTCTCACCCCCTTAGGTTGCTTCAAGCAAGAAAAGAGCCACTAATGGAGGTCTTAACAGGACTGATCTCCTCTTCTCTGAATGCACTGAAATTAAATTTTGGTTTTCTGAGAGCTCCATCATGAGCAGGTGCCATGAACCTTTTTGGGGGATTCAACTTAGAGGGACTGAAGTGGATCTGGAAGATATGGCAAACTTTATAGACAGTTGATCCATCCAGTCATTTACCTGTGTATCTGTATGTcagtctgtctgcctgtctgccttcctgcctgcataaaaaaaaacaaacaaaaaaaaaacgcaaggGTCAAATATTATGCTGATATGAAGCACTTAAATTTGTCATGTGATTATTGTGTCAGTCATGTGATTGGTAAGAAGAAAATGTatctaaatgttaattaaattccattgtgatgtgatgtaacACAATAAGTGCAAGGTAAAGTCATCAGAAATACTGGAAGCCGGAAAGCTGATCGAATTATGCAACATATACTGTatcacattcttaaaaaaacaaaccaaaaaaatcatCATGAATCAAATATTTGAGACAACCCACCACTGTACATTATTCTTGTTCTTAAGTGTTCAGAAATCCTATAATAAGCAACCCGACACACAGCAGAGCACTCCAGTACGTTAATAGTGTGTGGTCAAGATTTCCAACAGCtgtgtaaaatttgtaaaacaGCTGCTCACTTATTGTAGTATCTTTATACTGCACTTTGCCATCAAGGACAAATGAGGACCTCATTCCCAGAACAAAGATCACCCCCATCACATTCCCTTCATAGCCTACTCCAGCTTCATCCGAGGCTCTTTCATGTCTGCAAAGTCTTTGAAATGGCTCATTCCACCCCCTTATTATCTTCTCTATTACCAATCAGAGGAAATAACAGCTCTTAAACTCTCGAAGCTCTGCGTTTGTGTTGGTCTAAAGGTCACACACGGACTGCACAGCAAGTCTTAGTCACACAGCCTTaatatttgttgtgttttgtattaTAAATACATCAAAAATCTCCAAATTATTATGCAAATCCATAGTACAGCCTGAGTGGTACTGCATGAGACTGGACGTTCGCTAAGTTTTACTAGTTAtcatgaacatactgtataatatagaAATTCATATGCAGTTACCTGCAGTTACATATTATCAAACTGAAAGCTGGAGTCTGTAAGAGAATGTGTGCCTACTTgtgcaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtacaTGGGAAGAGAACTTCAGCAAAATTGGCTACATCAGTGAAGCTGAGGAAGGTCCAAGTTTCTAGTTAGTGAACTGAGGGATGTAAAAAACGGTTTGCTTCTGGACGCATACGAGATTTCTACATTTCAGTTTCAATAAGGGATTTTTTATATGGTGTAAATCTTAAATCATTTGCAGAcgtgtttaattatttttagttgtctttttttttaaaagggtgTGTATAGTCCAGTTGGCATTTTAGAAATGACAGAAAGATGATTGTACACTGATACTTATCATATATTTCTTATGTATCTTGTATTATCCACAATCATGCCAAAccaaagaaataagaaaaagcaGCAAAATGTTTCATCTTAAccatattttctgtaatattttaccTGAGAGACGCAGTATGAGCGTTTTGAGGATATCTTTAAGTGAGATTTTATCTAAATGGAGTCAGAGGGATACACCCACTGAGGGAGCACATGCAAATTTCTCCAAACCATTGTGGAAGCAGAGAAAAGACAAATCCAATTGCTCCCTTAtccatgtgcatgtgtgtgtgtgtgtgtgtgtgtatgctgaaaTGTAAAATCCATACAGTGTTTATATAATCATTCGTTGAGTAGCTGTAGGTTTGCGTTCATGTGGGTTTAACAGTATAATATTTTACTTTGCATAAGGCACACTTTCTCCTGGGCGATTTTTTTCTACCTCATGTGTTTTTGGGgaaattgtatatttaaaaaaagttatattcagATCTAAGTAGATATTTAAAACAAGAGCTTTTTATCTTAACATGCAACACTTTTGAACTAGCATATACAcctttaaaaacactttatgaattacttctttatttaataattataataattactttataaaagtatgatgttaaCCTTTATATAGactggtttatattatatatatcagCTTTTGAAGATCCAGAAATAAACCTGAACT

Function

symbol description
wnt9b Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; fin; head; otic vesicle; and pericardial region. Orthologous to human WNT9B (Wnt family member 9B).

NR:

description
PREDICTED: protein Wnt-9b

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01064 WNT9; wingless-type MMTV integration site family, member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916160.2 True 3522 mRNA 0.45 4 4982026 4991251

Neighbor

gene id symbol gene type direction distance location
LOC113528572 NA coding upstream 7196 4970822 ~ 4974830 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding upstream 211530 4737041 ~ 4770496 (+)
ezh1 ezh1 coding upstream 432548 4527593 ~ 4549478 (+)
moto meioc coding upstream 755981 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 850551 4120854 ~ 4131475 (+)
map3k14a LOC108259239 coding downstream 66671 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 98012 5089263 ~ 5091817 (+)
LOC113528651 NA coding downstream 98947 5090198 ~ 5090283 (+)
LOC113528648 NA coding downstream 99269 5090520 ~ 5090604 (+)
LOC113528650 NA coding downstream 99581 5090832 ~ 5090916 (+)
LOC117598842 NA non-coding upstream 56344 4923914 ~ 4925682 (+)
G205315 NA non-coding upstream 308997 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 418372 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 430161 4549561 ~ 4551865 (+)
G205303 NA non-coding upstream 443871 4537498 ~ 4538155 (+)
G205454 NA non-coding downstream 88736 5079987 ~ 5081204 (+)
G206157 NA non-coding downstream 638207 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 744119 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 763601 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 877611 5868862 ~ 5869806 (+)
psmc3ip psmc3ip other upstream 260558 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 270710 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 311380 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 995742 3966733 ~ 3986284 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 12297 5003548 ~ 5014516 (+)
G206166 NA other downstream 666361 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 898301 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1139529 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1169083 6160334 ~ 6175366 (+)

Expression


Co-expression Network