cacng4b (cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710)


Basic Information

Item Value
gene id cacng4b
gene name cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10360186 ~ 10373055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916162.2
CTCATTGGTTAGTGGGACTGAAGGTGGGGTTTGAGACTGAGCCGTCAAAAAAAGCCATATCCATTAGACTGAGGAAACTCGAGACGCTGGGAGAGGACAAGCGGCTTGGTTtctgttattaaattaaaaaaacaaaagggaaaaaatgattAGAGCAAACCGCGGTGATTTAAAAGCGGCTCCTGCTGAGCTCACTGACACGTGGAGGCGCCGCGCGCTTTTCACCTCGCGCAAGTTTGCCGTGGCTCCGGGCGCGCGCGCTGACTAACCAGCTCTGACGCTCGAGCGCGGGAACAAAAGGAGCGCGAGCTGttgccaaacacacacgcacgcacgcgtgCCGTGTCGCTCACGTgcgaaaaaaacccaaaaaaaaaaaaaaaaacaagaccgAGTGAGAGATTATTATGAGGTGCGATGGCTTGGTGCGACCGTGCAGTTCAGCTGCTCCTGGCCACCGTGGGCGCTTTCGTGGCGTTTAGCCTTATGACCATCGCTATCGGCACGGACTACTGGCTGTACTCCAGGGCTTACATTTGCAACGCGACCAACATCACAGCAGACGACACTCAGTCACAACCCAAGAAAACTCGCGGCGATCTCACGCACTCCGGGCTTTGGAGAATCTGCTGTATAGAAGGTCTCAACAAAGGAAGCTGTTACCGTATCAATCATTTTCCAGACGACAACGACTATGACACTGACAGCTCAGAATACCTCCTACGTATAGTACGTGCCTCCAGTGTGTTCCCCATTCTCAGTACCGTTCTACTACTTCTGGGGGGGCTGTGTGTGGGAGTAGGACGCATCTACAACAAGAGGAATAACATTTTGCTCAGTGCAGGGATCCTGTTTGTGGCAGCAGGTTTGAGTAACATCATTGGGATCATCGTTTACATCTCCAGCAACACTGGTGATCCCAGCGACAAGCGTGATGAGGACAAGAAGAGCCAATACAATTACGGCTGGTCGTTCTACTTTGGGGCTCTCTCGTTCATCCTCGCGGAGGCGGTTGCTGTCCTAGCTGTGAACATCTACATCGAAAAGAACAAAGAGGTGCGCTTCCAAGCACGACGAGAGTTTGTCAAGTCTACCTCGTCCTCCTCACCGTACTCACGCATGTCCAGTTTCCGCTACAGGCGGCGACATTCACGTTCCAGCTCGCGTTCCACAGAGGCGTCCCGCGAGGCGTCTCCAGTCGGTATAAAGATGGTGAGCTCCGTGCCTCTGGGTGAGATTAACATGTACACGCTGAGCAGAGATCCGCTGAAATCGGGCACTGACAGCTCCTATAGCCCTGAACACGACTCTGGATTCCTGCAGGTGCACAACTGCTTTCCCAAAGACTTGAATGATAGCATCAACAGGAGGACAACACCAGTATGAGAACTTAATGACAGGAATGTTATAGAAATACAATGTCTTGGCCATATAACATGGGAACACCACTGAGGCCTATTGGCTTAGTAGAAGCACTAGTTCAATTAATTGCGATGATTCAACTACCTAAGGACTACTACCTTTGATGGGGGAATTTGAATGGGTTTCATCAACAGCATTTAATCCTTAAATTTCAGTTGCACCAGTGTTTTGGCCCAAGTGTTTCCTCCTTACAGTGTTATTAAGAAAGGATTTAAGAGACTAGCTGTGGTGGATCTGTAAAGCTAATTCCATCCATTTTACAAACAATCTTTGAATAGTGCATTGTGGAATTATATAAAGTGTGAAATTAAAGTGTGAACAAATCCAATTTTGATAGGAAGTCTATTCTCTGTATGAGTCATAGACACAGTGGAGATTCAGAATACACCATTTTAAATATGACTGTCCAAATATAAAATGGTGCTACAGGAAGTAGTCTCACAGGTTAAGCCTTCCCCTTcttgtgtattttgtatatacTTGAACCCTGTATTGCCTTGTCCGTGTCACATGTCTGTAAACACAACTGTCATAACCTAATCTGTGTGCCTCTCTGCTTATCAGGATCAGCAATTTTAGCTGAGCTAACCTGTAGGTATTTTCACTGCAGAGAATactatgtttaattatttttgtgaaaCTAGAAATAAGCTAGGCTTGCACACACTGAAACTACAGAATGATAAGGATACAAAGAAGAAACTACAAGGCAAGCACAAAGTATTTCAGTACTGTGaagctttatattatatttttaattaccaCATTGATAATGTGCCATCAGCTGTCAGCTGAAAACCACCTGTGTTGTTCTCTGTAGTGAATGAATTGAAGATGAATGCTATTCCACTGCCGTCGTTCTCGGCAACAAGGACCTTGGGGTCTAAAATGTGGGTTAAATCGAAGTGTATTCTGGTGGTGTTATGAATCAGATCTGGATGTAATCTGAATGATGGCTGTGCGTCTACTCCATGCCGGTGCAGCCCTGTGTAAATCTGAATTGTGTGCTACTGGGACTGTGACATTGTGAAAGTCTAAAGATAAACGTTGGGCTGAGAAATGTCAGACATCCAGAACTGAAAGAGCCCGTCAGCACTGAGAGGCATTTCAATGGTGCAGTCCGTTTGCCGATAACAATCTAGGacaaagaagaataaaagactGTCAGTTGCATCAATGAGGCCAAACCAGCGCTTCATCCGTGTCTTAGTTTTGTGAGCCTTATGATTGGAATTCCTTTCAAATCTCTGTGCCAGCCAGAAATGTACTTtgtcactgtttattttctcaatataacagcatgtctgtgGTACAACCTCTTACTTTGTCATTTATGTTTACAAGGACACTTATGGTGGTGAGAGAATAATGTATAGTTTTCAGTCAGTGCATATTGCTGAATGACTCATCATGGGACAAATCATCTCAGttacttgtatatatatatatctacctTCATTTACTAAGGCATTTTTTACATGAGCTTAGAACCATGCCTCTGCATAGCATGGTGTATGGTTGGTCGTCTTGAATATTGACATTTCCTATGATCCTTTGACTGTGCGTGCTATAGCTATTATAATAATTTGGTTCCAAAGGCCTTGCTGGCATTTTGGTGACATAATCATGATTACATGCCTATaacactctgtctttctcaaaAAAGAGATTTTCTCTCCTcaacttctttcttttctggtGTTCCTAGTATAGCAGTCCCACTAACAACGTCACTATAACCTTGCTCacttaaataaattacatcagGGCACATGTTTTGcttgtatgtgtatatttttatttcatctgggGTGAAACATATGGTCCTACAACAGCTTTTCAATGGAAAATGACCTACTGAACTGAAAAATGTCACCACTACCTGTCTATAAATTCCTTACAACCTGATGATGGACCTGctttttttgacaaaaatcaaatagtgtatgttaagatattataaataaaaacaaaaaacaaaa

Function

symbol description
cacng4b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG4 (calcium voltage-gated channel auxiliary subunit gamma 4).

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-4 subunit-like

GO: NA

KEGG:

id description
K04869 CACNG4; voltage-dependent calcium channel gamma-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916162.2 True 3404 mRNA 0.43 4 10360186 10373055

Neighbor

gene id symbol gene type direction distance location
cacng1b cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235 coding downstream 4713 10345265 ~ 10355473 (-)
pitpnc1a LOC108274028,LOC108412868,LOC107691236,LOC107665814,LOC107752702,LOC106903613,LOC107743029 coding downstream 64063 10230636 ~ 10296123 (-)
dxo dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708 coding downstream 130787 10223395 ~ 10229399 (-)
anks4b anks4b coding downstream 146775 10209348 ~ 10213411 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding downstream 152972 10197508 ~ 10207214 (-)
aimp2 aimp2,LOC106601790 coding upstream 8138 10381193 ~ 10384307 (-)
trnac-gca_22 NA coding upstream 11994 10385049 ~ 10385120 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding upstream 30725 10403780 ~ 10407080 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding upstream 39950 10413005 ~ 10414768 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding upstream 42846 10415901 ~ 10417915 (-)
G208951 NA non-coding downstream 17964 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 69301 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 172934 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 293830 10063977 ~ 10066356 (-)
G208613 msl1 non-coding downstream 442657 9914907 ~ 9917529 (-)
G208964 lmtk2 non-coding upstream 74681 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 145287 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 260480 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 715958 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 845604 11218659 ~ 11221378 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 627620 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 885708 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 940602 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1156546 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1217315 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 77669 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1269102 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1326794 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1924721 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1960799 12333854 ~ 12339269 (-)

Expression


Co-expression Network