nudt9 (nudt9,LOC107590571)


Basic Information

Item Value
gene id nudt9
gene name nudt9,LOC107590571
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6149355 ~ 6160172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916165.2
ACGGATGCCGCAGCTGGTGGGAGGAGTCGTCTAGTTGGTTGCGACTGTTCACTTCCTGGTTACTGCAGGCGGTTTTGGGAGTTTTGTGATGAAACGAGTGTTAGGAAACTGGGCAGAGTCGGTGCATATCACTCTTACACTCGTGACATTACCCTTCACCATTCGTGCGAGTGGAGTCTGTAAATCCATCAACACCAGAGCATCCAGTGTGTGTACAATAAGTTCTGTCTCCATGTCGTCTGCACCGCACATCAAGGCCCGTTGCACAGTGTACCTCGGCTCAGACAAACAACGCTTCCCTGTTCCAGATGATAAAGTGAGCTGGGCGACGCTCTGGCCCGAGTACAGTCCTGTGAACTACACTGCACCGTCTGTGCTGAAGAAACCTGCCTGGGCTGATCCAGACATCGGttCTTTTTCTCCCCGGTTTAACTCGCTTGACGGGTCTGTGGATAGGCGGAGCCATGAAGGAGATTACAGCATACAGGATGGTCGTCCACTTAACCCTAGAGGAAGAACTGGCCTGAATGGACGGGGTCTTCTTGGCAGGTGGGGTCCTAACCATGCTGCAGATCCCATAGTAACCAGGTGGAAGCAGGATTCTACAGGCAAGCGTGTTTCTCATGCTGTCTCTAAACGTCCTGTGTTGCAGTTTGTGTCCATCAAGAGGAAAGACTGTGGAGAATGGGCCATCCCAGGGGGTATGGTCGACCCAGGAGAGTTGGTGTCTCAGACTCTGCAGCGAGAATTCTCCGAGGAAGCTTTGAACTCTTTCCAGGCTTGTCCAGAAGAGCGCAAAAAGATCTACGAGCGGATCTCGAAGCTGTTCAGTTCACCTGGTTTTCAGGTGTATAAAGGTTATGTCGATGACCCAAGAAACACAGACAATTCCTGGATGGAAACAGTTGCTGTTAACTTTCATGATGAACTAGGTGACAGTGTGAGCGAGCTGCCTCTGCAAGCAGGCGACGATGCAGGACAGGTCAGCTGGTGCGACGTTGATTCTTCTCAGCCTCTGTACGCCAGTCACTCACATTTCCTCCAGATAGTAGCGGAGGAAAGACACGCACACTGGTAACAGGAGGGAAATGACAAGTGCCTTTGAAGATgcgataaaaaaaaattacgttTGAACACAATAATGATTGTTTTTGTAGATATGTGATATTAGTCATAAATGACTAAAATGGTGCTGAAGTTCCAGCTTGTAGTCTGGCCTTTCATCCTGCAGTGTTGTACTTAAACTACACAAAACCGTTTAGGCACGTCTGATTGGTTCAGAGCCGGGATTCATGATTTCAAACATGTTCTGATGGACACATACTGTCTCTAATGCATTCTTCTCTGCTGAAGTCTGACGTCAGTGCAATAGACAGCAGTTTCAGTCTGAATTCAGTTAATTTATACTCACAAGCCAAAGCACACCCAGTATCTACTTGCATGTACATGGAAGACTGTCAtctactatttattatttactgtacgTGTGCAACTTAATTAAAGACTTGGAAAAAATGAAGGTAAATTCTTTAAGACCTGtaaaattgaatagaattttTCCTTAACTACAAATAATCACTCAACACTGTGTCACTGATATAATAAATACACCTTGAAGTCTCTCTCTTACTTAAAGTCATAGTATTTGTGCTCTAATATCCAGTAAGTGAAGTGTTGAAATGCAgaagacacaaaaataaattgtacatGGGGTTTCTGGGACCATGACCGAGATCTCTTTTTCCACTGCATAGCTACGGGGTTTGTTGTTTTAATCATGTATTTCTTTTATCATGTATCATGTAATCATGTAATTCTAACATTGTTAACCATTTTAGCTGTATGTGCACTTTTTTCTCCTTACATATATGTTTGGGCCTGGGTGAAGATTATTGAAATGAAACACTGGTTCTGATCTGATAAATTATCGACACTGTATTTAACACCAATAAAAAGCTGCGGAATATG
>XM_034309895.1
GAGGAAAAGCTTGGCAGGGCACTCCTGTCCACTGCAGGACTGTTTTCACTGTACAGCCCATTGGTCACCTGTTGAGTCATTATTATCAGGCGTGACTCCTGCGTGGTTGGAATAAAAGCCTGAAGCCACGCTGCAGATAAGTCTGATGACCCCTGCCCTCGATGTTTAACAGAAGCACAACACCTAGGCTACGTCATGAAAAATTATCAGTTTATCCTAGTCAAGATTGGACTGGATCTCCAGCTTACtctgggaatacaccctggatgcaatgccagtccatcacaggTAAATCCATCAACACCAGAGCATCCAGTGTGTGTACAATAAGTTCTGTCTCCATGTCGTCTGCACCGCACATCAAGGCCCGTTGCACAGTGTACCTCGGCTCAGACAAACAACGCTTCCCTGTTCCAGATGATAAAGTGAGCTGGGCGACGCTCTGGCCCGAGTACAGTCCTGTGAACTACACTGCACCGTCTGTGCTGAAGAAACCTGCCTGGGCTGATCCAGACATCGGttCTTTTTCTCCCCGGTTTAACTCGCTTGACGGGTCTGTGGATAGGCGGAGCCATGAAGGAGATTACAGCATACAGGATGGTCGTCCACTTAACCCTAGAGGAAGAACTGGCCTGAATGGACGGGGTCTTCTTGGCAGGTGGGGTCCTAACCATGCTGCAGATCCCATAGTAACCAGGTGGAAGCAGGATTCTACAGGCAAGCGTGTTTCTCATGCTGTCTCTAAACGTCCTGTGTTGCAGTTTGTGTCCATCAAGAGGAAAGACTGTGGAGAATGGGCCATCCCAGGGGGTATGGTCGACCCAGGAGAGTTGGTGTCTCAGACTCTGCAGCGAGAATTCTCCGAGGAAGCTTTGAACTCTTTCCAGGCTTGTCCAGAAGAGCGCAAAAAGATCTACGAGCGGATCTCGAAGCTGTTCAGTTCACCTGGTTTTCAGGTGTATAAAGGTTATGTCGATGACCCAAGAAACACAGACAATTCCTGGATGGAAACAGTTGCTGTTAACTTTCATGATGAACTAGGTGACAGTGTGAGCGAGCTGCCTCTGCAAGCAGGCGACGATGCAGGACAGGTCAGCTGGTGCGACGTTGATTCTTCTCAGCCTCTGTACGCCAGTCACTCACATTTCCTCCAGATAGTAGCGGAGGAAAGACACGCACACTGGTAACAGGAGGGAAATGACAAGTGCCTTTGAAGATgcgataaaaaaaaattacgttTGAACACAATAATGATTGTTTTTGTAGATATGTGATATTAGTCATAAATGACTAAAATGGTGCTGAAGTTCCAGCTTGTAGTCTGGCCTTTCATCCTGCAGTGTTGTACTTAAACTACACAAAACCGTTTAGGCACGTCTGATTGGTTCAGAGCCGGGATTCATGATTTCAAACATGTTCTGATGGACACATACTGTCTCTAATGCATTCTTCTCTGCTGAAGTCTGACGTCAGTGCAATAGACAGCAGTTTCAGTCTGAATTCAGTTAATTTATACTCACAAGCCAAAGCACACCCAGTATCTACTTGCATGTACATGGAAGACTGTCAtctactatttattatttactgtacgTGTGCAACTTAATTAAAGACTTGGAAAAAATGAAGGTAAATTCTTTAAGACCTGtaaaattgaatagaattttTCCTTAACTACAAATAATCACTCAACACTGTGTCACTGATATAATAAATACACCTTGAAGTCTCTCTCTTACTTAAAGTCATAGTATTTGTGCTCTAATATCCAGTAAGTGAAGTGTTGAAATGCAgaagacacaaaaataaattgtacatGGGGTTTCTGGGACCATGACCGAGATCTCTTTTTCCACTGCATAGCTACGGGGTTTGTTGTTTTAATCATGTATTTCTTTTATCATGTATCATGTAATCATGTAATTCTAACATTGTTAACCATTTTAGCTGTATGTGCACTTTTTTCTCCTTACATATATGTTTGGGCCTGGGTGAAGATTATTGAAATGAAACACTGGTTCTGATCTGATAAATTATCGACACTGTATTTAACACCAATAAAAAGCTGCGGAATATG

Function

symbol description
nudt9 Predicted to enable ADP-ribose diphosphatase activity. Involved in regulation of cyclic nucleotide-gated ion channel activity. Is expressed in several structures, including Kupffer's vesicle; axial chorda mesoderm; axis; nervous system; and trigeminal placode. Orthologous to human NUDT9 (nudix hydrolase 9).

NR:

description
ADP-ribose pyrophosphatase, mitochondrial

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13988 NUDT9; ADP-ribose pyrophosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916165.2 False 1968 mRNA 0.44 8 6149355 6156849
XM_034309895.1 True 2077 mRNA 0.44 11 6149355 6160172

Neighbor

gene id symbol gene type direction distance location
arhgap23a LOC108276663 coding downstream 43471 6026279 ~ 6105884 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding downstream 131368 5981200 ~ 6017987 (-)
nmt1a nmt1,LOC108432052,LOC102778525 coding downstream 170982 5962688 ~ 5978373 (-)
cdk21 LOC108274791 coding downstream 210924 5934040 ~ 5938431 (-)
svilc LOC108281065 coding downstream 217479 5897560 ~ 5931876 (-)
atp2a1 atp2a1,LOC108411044,LOC107755578,LOC107567734,LOC107690283,LOC107590562 coding upstream 63298 6223470 ~ 6238688 (-)
hsp70.3 LOC108259092 coding upstream 88610 6248782 ~ 6251486 (-)
aclya acly,aclya,LOC107729187,LOC107567706,LOC107755575 coding upstream 117044 6277216 ~ 6303481 (-)
cnp cnp coding upstream 147498 6307670 ~ 6312808 (-)
ttc25 ttc25 coding upstream 155127 6315299 ~ 6323127 (-)
LOC113528476 NA non-coding downstream 195851 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 421675 5721634 ~ 5727680 (-)
G206164 NA non-coding downstream 517436 5631715 ~ 5631919 (-)
LOC113528378 NA non-coding downstream 864450 5280730 ~ 5284905 (-)
G205628 NA non-coding downstream 1092239 5056910 ~ 5057116 (-)
LOC113527891 NA non-coding upstream 27302 6187474 ~ 6189926 (-)
G206628 NA non-coding upstream 43140 6203312 ~ 6204196 (-)
G206649 NA non-coding upstream 113644 6273816 ~ 6346363 (-)
G206924 NA non-coding upstream 664724 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 666196 6826368 ~ 6828146 (-)
LOC113528542 NA other downstream 188305 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 198358 5940862 ~ 5950997 (-)
G206282 NA other downstream 307878 5841137 ~ 5841477 (-)
G206236 NA other downstream 392622 5754767 ~ 5756733 (-)
G205633 rps11,LOC102786880,LOC107674708 other downstream 1057433 5089336 ~ 5091922 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 485886 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 1158431 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 1265545 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1399595 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 2089713 8249885 ~ 8267638 (-)

Expression


Co-expression Network