LOC113527963 (rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212)


Basic Information

Item Value
gene id LOC113527963
gene name rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16538381 ~ 16545640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916166.2
ataaacatataGTCTATCGAAAATGTCGCACGATCTGTGACGTCATCGCGTTAGTTACGCCAACAAAAGGCGACACTAGTTTTAGCGCTAGGACGTGGTGCGCCTGAAGAAGATGGCTCCATCACCTACCAAACGCAGGGAGCGGTCAGAAGATAAAGCTCGAGAGAGGGGCAAAGATAAAGCTGTGGTGAAGGAAGGTGCGGAGAAAGAGAGGGGCAGAGACAAGAACCGCAAGCGACGCAGTAACTCCACtgggagcagcagcagcagGTCTAGGTCCAGTTCCAgctccagcagcagctctggTTCCAGTTCAGGTTCCTCAAGTGGCTCCAGCTCCTCTTCAGGCTCTAGTCGCTCTGGCTCGTCCAGCTCATCGCGGTCCTCCAGCTCCTCTGGCTCCTCAGCATCACCCAGCCCGAGCCGACGTCGGCATGACAATCGCAGGCGGTCGCGTTCAAAGTCTAAGTCTCAGAAGAGAGTTGATGAAAAAGAACGGAAAAGGAGGAGCCCTAGCCCTAAGCCCACCAAGCTTCATGTTGGAAGACTGACAAGGAATGTCACCAAGGATCACATTCAAGAGATCTTCTCTACGTATGGGAAGATCAAAATGATTGACATGCCATCAGACCGATGTCATCCAAACTTGTCGAGAGGTTATGCCTACGTCGAGTATGAAACTTCAGAGGATGCCCAGAAGGCCCTGAAACACATGGATGGAGGTCAAATAGATGGTCAAGAAATCACAGCGACAGCTGTCCTCACTCAGAGGATGCGACCTGCCCCTCGCAGGCTGTCCCCTCCACGTAGGATGCCTCCTCCTCCACCCATGTGGCGCCGTACTCCACCTCGCATGAGGAGAAGGTCTCGGTCACCACGTCGCCGTTCCCCAGTAAGAAGACGATCTCGCTCAAGATCTCCGGGGCGCAGACGCCATCGCTCACGTTCCAGCTCCAACTCTTCACGATAGAGAAGTCCTCCCCAAGATTTGCAAAAGCTTGTAGTTCAGTGTCTCACCTTAGTTTGTTTACAGCAACAAGGAAGACACTTAATTCTGTAGTTTGAATGGACAGAATCTACTAATTTTGATCTGAGTGATAAATGAATCCTCTTTTTTGCTTTCCTTCAGAATTTGGCCTGTATCCATCACATTTTGTTCAGTTGAGTCAATGTGTGCATCAATTTTAAGCTTTACTCTCTGTGTAGTGTGCATAAGGAAAATGTTGCTGTTCTTATTTGACATACACAGCTAGTGCCAGCATACAAGTTTTTCTttctattattgtttttttttttttttttaaagtagttttAAGGTTACTGGAAGCTGATTACATTACATGTCTGTATTGATTAAAATTCCAGCGTGTATTGATTAAA

Function

symbol description
rnps1 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RNPS1 (RNA binding protein with serine rich domain 1).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916166.2 True 1380 mRNA 0.48 7 16538381 16545640

Neighbor

gene id symbol gene type direction distance location
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding downstream 1127 16501121 ~ 16537254 (-)
sox8a sox8 coding downstream 207842 16326885 ~ 16330539 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding downstream 310939 16225651 ~ 16227442 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding downstream 920997 15607444 ~ 15617384 (-)
LOC113528397 stk31 coding downstream 943177 15582604 ~ 15595204 (-)
LOC113528041 LOC108276772 coding upstream 69451 16615091 ~ 16634737 (-)
LOC117595684 NA coding upstream 125505 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding upstream 125505 16671145 ~ 16677834 (-)
abca3b abca3,abca3b,LOC107742093 coding upstream 145870 16691510 ~ 16736757 (-)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 192301 16737941 ~ 16752068 (-)
G212319 NA non-coding downstream 41149 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 82534 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 497982 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 501064 16037116 ~ 16037317 (-)
G212006 NA non-coding downstream 595872 15940586 ~ 15942509 (-)
G212395 NA non-coding upstream 135544 16681184 ~ 16690337 (-)
G212463 NA non-coding upstream 286328 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 632888 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 738860 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 746720 17292360 ~ 17292723 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 334390 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1552269 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1848249 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2017406 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 2508740 14017615 ~ 14029641 (-)
LOC113528039 LOC108276772 other upstream 26905 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 215592 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 747133 17292773 ~ 17319719 (-)
G212700 NA other upstream 840571 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 844546 17390186 ~ 17518527 (-)

Expression


Co-expression Network