LOC113527964 (LOC108260935)


Basic Information

Item Value
gene id LOC113527964
gene name LOC108260935
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14875335 ~ 14878123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916167.2
GAGTTGACGCATGCGCACTGCTATGTAAATAACTGTAGTGGCTAAGCGCTAGTTGTTTGAAGTACTTAGGTAGCTAGACTTTTTAAAGTAAACCACTAACTATTATTGGTTTTTAGTAAAGCTATTTGGAAACGTAAGTGATAGGTGATTGTGTAGGGGGGTTAATAATCGTTGCAGCTGCGAGAACCTCTTTAATAAACCTCATGTTTACAACTTCGccctgctagctagctagctttcaGGCTAACGGTGCTAGCTGCCCAGGCAGTAGCAGGATGACAGGTAAACCAGCTGGCTAGTCTGTGAGCGGTCTGGTTAGCTGAGTAGCAGGATACACTGCATAAGCGTCAGATGTGGTGTATATTCAACATTTTAacgttttaataataaacaaaaagGGTGCAAGTGCAGCTAATAATCAGGTGGTGGATTACAATTTCGGTGGATTACAATCAGATCCAGTGCCTAGAAAAGTGGAAATTGGTTAACCCTAGAGGAATTCGCCATGTTATCTGAAAACAGGAAACGGCAGCGTACTCaaggcgatgatgatgatgcactTCTGATGCCTCAGGCCAAAAGATCAAGCACAACACTCCAGTGTTCTGAGGGGAGCAGAGAAGCATGGGAGTCTGAGTCCTCCAGCAGTGACAGCAGTGGAGTCAGTAGTCCAGAGCACGCAGCTGGGGCCAGCAGCAGCGCCAGCAGTCAGTATGGAGCCGAAAACCTCAGGTCCTGCAGTCCACATAGTTCCTCAGACCAAACCGAAGCCACAAGCCTGGCCTCGTACGAACATATCAACCGTGTCCTGAGAGAGGCTCACTTCCAGAGCCTACACAACAGAGGTCAGTCACGGGATAGGTGACTTTCAGAGAGTGTCACATCTCTGAGAGTGATCCCTTCACTCTACCTGAGCGCCTGGCTACGTTCCCCAGGAGACAGCGTAGAGATCATCAACAAGTTTATTCTGACTTTTACATGCTAGAGCTCTCAtttgtgattagtgtgatttttttgaATTGAAAGTGTGGCCTGAAACTGTAAAACTATTGACTAATTAGAGCACAAAAGGATTCACATTGTAAGCAATAATAGCTTGGTGGCAATGCAACCTTTTGTGACATAcacactgtgtatttttcttctgAACACACCAGTTTACATGTAAATGAGAGCTTCATTGCGGGTGGAACTGCTCCTGGTGCATATTATCGTTTCATTGCTGGTTCACTTGTGCACTTGGGGGGGTATGGGGTAATCACATTTACAACAATCTAGaaatcttttgtttatttattgaactCGATTGTTAAGTTGGCACTTGATGTATGTTGATGTGAGGTATAAACCCATGTTTGTAAGAACAAGCCCCTGGGTTTGTAACTCTTAGTGATGGAACAGCCATACACCCTTCCTCTTATATCAGCTCACTGATATGTGATTACGTTTCCATCCCCCCATCTCTTACTAGCTCTTTATCCAATGGTCATGTGGATCCAATTAAATTGCAAGATTacttgttgtttatttttactatatatttttatggaaACATTGGATGATATTTTACATTCATGTCacctacattttaaaaataaagatggcTGTTCCTAAGTACGAGTgcaactttattaaaaatgaaaatggcaacCCTG
>XM_026916168.2
GAGTTGACGCATGCGCACTGCTATGTAAATAACTGTAGTGGCTAAGCGCTAGTTGTTTGAAGTACTTAGGTAGCTAGACTTTTTAAAGTAAACCACTAACTATTATTGGTTTTTAGTAAAGCTATTTGGAAACGTAAGTGATAGGTGATTGTGTAGGGGGGTTAATAATCGTTGCAGCTGCGAGAACCTCTTTAATAAACCTCATGTTTACAACTTCGccctgctagctagctagctttcaGGCTAACGGTGCTAGCTGCCCAGGCAGTAGCAGGATGACAGGGTGCAAGTGCAGCTAATAATCAGGTGGTGGATTACAATTTCGGTGGATTACAATCAGATCCAGTGCCTAGAAAAGTGGAAATTGGTTAACCCTAGAGGAATTCGCCATGTTATCTGAAAACAGGAAACGGCAGCGTACTCaaggcgatgatgatgatgcactTCTGATGCCTCAGGCCAAAAGATCAAGCACAACACTCCAGTGTTCTGAGGGGAGCAGAGAAGCATGGGAGTCTGAGTCCTCCAGCAGTGACAGCAGTGGAGTCAGTAGTCCAGAGCACGCAGCTGGGGCCAGCAGCAGCGCCAGCAGTCAGTATGGAGCCGAAAACCTCAGGTCCTGCAGTCCACATAGTTCCTCAGACCAAACCGAAGCCACAAGCCTGGCCTCGTACGAACATATCAACCGTGTCCTGAGAGAGGCTCACTTCCAGAGCCTACACAACAGAGGTCAGTCACGGGATAGGTGACTTTCAGAGAGTGTCACATCTCTGAGAGTGATCCCTTCACTCTACCTGAGCGCCTGGCTACGTTCCCCAGGAGACAGCGTAGAGATCATCAACAAGTTTATTCTGACTTTTACATGCTAGAGCTCTCAtttgtgattagtgtgatttttttgaATTGAAAGTGTGGCCTGAAACTGTAAAACTATTGACTAATTAGAGCACAAAAGGATTCACATTGTAAGCAATAATAGCTTGGTGGCAATGCAACCTTTTGTGACATAcacactgtgtatttttcttctgAACACACCAGTTTACATGTAAATGAGAGCTTCATTGCGGGTGGAACTGCTCCTGGTGCATATTATCGTTTCATTGCTGGTTCACTTGTGCACTTGGGGGGGTATGGGGTAATCACATTTACAACAATCTAGaaatcttttgtttatttattgaactCGATTGTTAAGTTGGCACTTGATGTATGTTGATGTGAGGTATAAACCCATGTTTGTAAGAACAAGCCCCTGGGTTTGTAACTCTTAGTGATGGAACAGCCATACACCCTTCCTCTTATATCAGCTCACTGATATGTGATTACGTTTCCATCCCCCCATCTCTTACTAGCTCTTTATCCAATGGTCATGTGGATCCAATTAAATTGCAAGATTacttgttgtttatttttactatatatttttatggaaACATTGGATGATATTTTACATTCATGTCacctacattttaaaaataaagatggcTGTTCCTAAGTACGAGTgcaactttattaaaaatgaaaatggcaacCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916167.2 True 1655 mRNA 0.43 4 14875335 14878123
XM_026916168.2 False 1539 mRNA 0.43 4 14875335 14878123

Neighbor

gene id symbol gene type direction distance location
LOC113528036 LOC108255868 coding downstream 34966 14768607 ~ 14840369 (-)
fscn2a LOC108274411,LOC108437142 coding downstream 136752 14732903 ~ 14738583 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding downstream 166256 14692193 ~ 14709079 (-)
LOC117599009 NA coding downstream 384560 14487821 ~ 14490775 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 410044 14463405 ~ 14465291 (-)
otop2 otop2 coding upstream 22710 14900833 ~ 14909395 (-)
amn amn coding upstream 53793 14931916 ~ 14934161 (-)
LOC113528557 LOC108260380 coding upstream 63780 14941903 ~ 14947534 (-)
LOC113528182 LOC108274645,LOC108274429 coding upstream 76935 14955058 ~ 14972584 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding upstream 160247 15038370 ~ 15051643 (-)
G211274 NA non-coding downstream 27879 14847252 ~ 14847456 (-)
G211269 NA non-coding downstream 31023 14827235 ~ 14844312 (-)
G211195 socs3 non-coding downstream 253553 14619232 ~ 14621782 (-)
G211187 NA non-coding downstream 280671 14588820 ~ 14594664 (-)
G211054 LOC108275544 non-coding downstream 412926 14461792 ~ 14462409 (-)
G211346 NA non-coding upstream 56546 14934669 ~ 14935121 (-)
G211349 NA non-coding upstream 122822 15000945 ~ 15001328 (-)
G211363 NA non-coding upstream 157046 15035169 ~ 15036895 (-)
G211688 NA non-coding upstream 466386 15344509 ~ 15344731 (-)
G211737 NA non-coding upstream 593649 15471772 ~ 15473343 (-)
LOC113528445 LOC108274755 other downstream 185203 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 354360 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 845694 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 868823 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 874298 13993876 ~ 14001037 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 100496 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1272952 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1694422 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1883109 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 2414650 17292773 ~ 17319719 (-)

Expression


Co-expression Network