dus1l (dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270)


Basic Information

Item Value
gene id dus1l
gene name dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3630439 ~ 3639871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916172.2
AGGCAACGTACAGAAACTCTCGCGATATTTGACCTCACAACGATTTTTATGGAATATTACAGTGGAAAACAAGAAATTTTGCCACtttgtttttcagttcgCAGTGGGTCCTACCGGAACGCTTTGCGATAACTAGTGTTGTCGCACGGACCCACTTTCCCGCAACGCACCGCCGAGAGCACAGTGCTGTGCCTGAGCTGCGATGGAGAAGCTGCAGGGTTTTGAGTTCTGGAGGAAGACTCTTTGTGCTGCACGCTTCGTCCTCGCGCCCATGGTGGACCAGAGCGAGCTCGCGTGGAGGCTGCTGAGCCGCAGACACGGAGCGGAACTGTGCTACACACCGATGCTGCACGCGCAGGTGTTTGTACGCGACGCCAACTACCGGCGAGAAAATCTGTACAACGAAGTGAACCCTGAGGACCGCCCTCTCATCACACAGttctgtgcaaatgACCCAGAGGTGTTTGTCCAGGCAGCACTTTTAGCTCAGAACTACTGCGACGCCATCGACCTCAATTTAGGATGCCCTCAGATGATCGCTAAACGCGGTCACTACGGTGTGTTTCTGCAGGACGAGTGGGACTTACTGGAGAGAATGAttaaattagCCAACGAGAAGCTCTCCGTGCCCGTCACGTGCAAAATCCGGGTTTTTCCAGAGGttgaaaaaacagtgaaatatgcCAAGATGCTGGAAAAAGCGGGTTGCCAGTTGCTCACCGTTCATGGCAGAACCAAAGACCAGAAAGGAGCGCTGACCGGAGTGGCGAGCTGGGAGCACATTAAAGCCGTACGAGAAGCTGTGAACATCCCGGTTTTTGCTAACGGAAACATTCAGCACCTGAGTGACGTGCAGCGCTGCATGGCGGAGACGGGAGTGCAGGGCATCATGAGTGCAGAGGGGAACCTGCACAACCCGGCGCTGTTCGAGGGCCGTAACCCGCCTGTGTGGGAGGTGGTGGAGGAATATCTGGAGGTGGTGAAGAAACACACGCCCAGCACGCTATCACATGTCCGAGCTCATCTCTTTAAACTCTGGCATCACACGCTGCAGATCCATCAGGACCTGAGAGAAGATTTGGCCAAAGCAAAGAACCTGGCAGGAATTGAGGAGGTGAACAGACAGCTGAAGCAGCGCTGCCAGGAGGAGATGGGTAAGGATGAATCGGAGCGACATCAGACCGGACTGCCTTTTCCTCATTGGATCTGTCAGCCGTACGTCAGACCAGCGCCGAAGGATCCGAGCAGCGAGAACGGCGTGAAGGCGGTGAGCGGGAAAAGGGCGTTGGAGGACAGCGACAGCTCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGTCAGGAACCCGCAGAAGAACTTCTGCCCCGAGCTCAAACCAAAGTACATCAAATGTGAGCAATGTGGGAATCCCAAAGGGAATAAGTGTGTCTTTAACCTGTGTCGTGGCTGCTGTAAGAAAAAGGCTTATAAGGAAGTCGCAGATTGTCCAGGTCACGGCTTGAGGTTCAAGACGAAAGCGCAGAAGCAGAAGGTCGCTGTCCAAACAGAGATATCGTCCTAAACCTCTGCGTCGCTCGAGTTCCGGCTCGGACTTTGCTAAGAGTTCGGTTTTAGCATCCGCACTGCAAACGCAACTCATGCTGTAAACGCAACAAAACGAGTGTATCTtactcacatacacatatgcatTGAAACCGAATACTGCTGCTGAAGAGTAAAAACTTATTACTACTTTAGAGGGGAACGAATTCcatacaggaaaacaatcacaCACGATTAAAATCTGTAACTTGCAGAGACTAAATTTTGTACGTAGGGTTTTCATGTAGCTGCAACTTGTAGCTACAACATTGTTTTagctaagccccgcccccaaagaCTTGCCAATATACTGTAAACCTCGGCGTTGTGGCTGTTTTACACTTCAATCCTCAGATATTAAACGGAACAGCTAGAATACAGGGCTAACTTATTTAAACTACGCAAACACCTTTTCTGTTTTAAcgggttttttaaaaattattaatttatttacatttaggttttttttttaaacataacagATACCcaatattttcacatgttcaatCAACACCAAAGTCAAATTTCAGTTTCTGCTGATGTTCTACATTTGCGACACTCACGCGGGAGAATGTTGACGCTCTTGGGAAATCAGGATATCATGTCAGAGCTGGATTTACCAGCACGTTATCTGAACACAGCTTGAAAATTGAAATCTAGTGTAGTATCCTCGAGGTACATGAAACTGCTGTTTTTCTGAGGATCATCTGTGACATTTccactgctttgtgtttttaacaTTGAGGTTTTTACAAtgaataaaacttttaaagTTCTTTTAAGCAA
>XM_034309671.1
CAGGCAACGTACAGAAACTCTCGCGATATTTGACCTCACAACGATTTTTATGGAATATTACAGTGGAAAACAAGAAATTTTGCCACtttgtttttcagttcgCAGTGGGTCCTACCGGAACGCTTTGCGATAACTAGTGTTGTCGCACGGACCCACTTTCCCGCAACGCACCGCCGAGAGCACAGTGCTGTGCCTGAGCTGAGGCGATGGAGAAGCTGCAGGGTTTTGAGTTCTGGAGGAAGACTCTTTGTGCTGCACGCTTCGTCCTCGCGCCCATGGTGGACCAGAGCGAGCTCGCGTGGAGGCTGCTGAGCCGCAGACACGGAGCGGAACTGTGCTACACACCGATGCTGCACGCGCAGGTGTTTGTACGCGACGCCAACTACCGGCGAGAAAATCTGTACAACGAAGTGAACCCTGAGGACCGCCCTCTCATCACACAGttctgtgcaaatgACCCAGAGGTGTTTGTCCAGGCAGCACTTTTAGCTCAGAACTACTGCGACGCCATCGACCTCAATTTAGGATGCCCTCAGATGATCGCTAAACGCGGTCACTACGGTGTGTTTCTGCAGGACGAGTGGGACTTACTGGAGAGAATGAttaaattagCCAACGAGAAGCTCTCCGTGCCCGTCACGTGCAAAATCCGGGTTTTTCCAGAGGttgaaaaaacagtgaaatatgcCAAGATGCTGGAAAAAGCGGGTTGCCAGTTGCTCACCGTTCATGGCAGAACCAAAGACCAGAAAGGAGCGCTGACCGGAGTGGCGAGCTGGGAGCACATTAAAGCCGTACGAGAAGCTGTGAACATCCCGGTTTTTGCTAACGGAAACATTCAGCACCTGAGTGACGTGCAGCGCTGCATGGCGGAGACGGGAGTGCAGGGCATCATGAGTGCAGAGGGGAACCTGCACAACCCGGCGCTGTTCGAGGGCCGTAACCCGCCTGTGTGGGAGGTGGTGGAGGAATATCTGGAGGTGGTGAAGAAACACACGCCCAGCACGCTATCACATGTCCGAGCTCATCTCTTTAAACTCTGGCATCACACGCTGCAGATCCATCAGGACCTGAGAGAAGATTTGGCCAAAGCAAAGAACCTGGCAGGAATTGAGGAGGTGAACAGACAGCTGAAGCAGCGCTGCCAGGAGGAGATGGGTAAGGATGAATCGGAGCGACATCAGACCGGACTGCCTTTTCCTCATTGGATCTGTCAGCCGTACGTCAGACCAGCGCCGAAGGATCCGAGCAGCGAGAACGGCGTGAAGGCGGTGAGCGGGAAAAGGGCGTTGGAGGACAGCGACAGCTCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGTCAGGAACCCGCAGAAGAACTTCTGCCCCGAGCTCAAACCAAAGTACATCAAATGTGAGCAATGTGGGAATCCCAAAGGGAATAAGTGTGTCTTTAACCTGTGTCGTGGCTGCTGTAAGAAAAAGGCTTATAAGGAAGTCGCAGATTGTCCAGGTCACGGCTTGAGGTTCAAGACGAAAGCGCAGAAGCAGAAGGTCGCTGTCCAAACAGAGATATCGTCCTAAACCTCTGCGTCGCTCGAGTTCCGGCTCGGACTTTGCTAAGAGTTCGGTTTTAGCATCCGCACTGCAAACGCAACTCATGCTGTAAACGCAACAAAACGAGTGTATCTtactcacatacacatatgcatTGAAACCGAATACTGCTGCTGAAGAGTAAAAACTTATTACTACTTTAGAGGGGAACGAATTCcatacaggaaaacaatcacaCACGATTAAAATCTGTAACTTGCAGAGACTAAATTTTGTACGTAGGGTTTTCATGTAGCTGCAACTTGTAGCTACAACATTGTTTTagctaagccccgcccccaaagaCTTGCCAATATACTGTAAACCTCGGCGTTGTGGCTGTTTTACACTTCAATCCTCAGATATTAAACGGAACAGCTAGAATACAGGGCTAACTTATTTAAACTACGCAAACACCTTTTCTGTTTTAAcgggttttttaaaaattattaatttatttacatttaggttttttttttaaacataacagATACCcaatattttcacatgttcaatCAACACCAAAGTCAAATTTCAGTTTCTGCTGATGTTCTACATTTGCGACACTCACGCGGGAGAATGTTGACGCTCTTGGGAAATCAGGATATCATGTCAGAGCTGGATTTACCAGCACGTTATCTGAACACAGCTTGAAAATTGAAATCTAGTGTAGTATCCTCGAGGTACATGAAACTGCTGTTTTTCTGAGGATCATCTGTGACATTTccactgctttgtgtttttaacaTTGAGGTTTTTACAAtgaataaaacttttaaagTTCTTTTAAGCAA
>XM_034309672.1
TTGTGATTTATATCCGGCGATGGAGAAGCTGCAGGGTTTTGAGTTCTGGAGGAAGACTCTTTGTGCTGCACGCTTCGTCCTCGCGCCCATGGTGGACCAGAGCGAGCTCGCGTGGAGGCTGCTGAGCCGCAGACACGGAGCGGAACTGTGCTACACACCGATGCTGCACGCGCAGGTGTTTGTACGCGACGCCAACTACCGGCGAGAAAATCTGTACAACGAAGTGAACCCTGAGGACCGCCCTCTCATCACACAGttctgtgcaaatgACCCAGAGGTGTTTGTCCAGGCAGCACTTTTAGCTCAGAACTACTGCGACGCCATCGACCTCAATTTAGGATGCCCTCAGATGATCGCTAAACGCGGTCACTACGGTGTGTTTCTGCAGGACGAGTGGGACTTACTGGAGAGAATGAttaaattagCCAACGAGAAGCTCTCCGTGCCCGTCACGTGCAAAATCCGGGTTTTTCCAGAGGttgaaaaaacagtgaaatatgcCAAGATGCTGGAAAAAGCGGGTTGCCAGTTGCTCACCGTTCATGGCAGAACCAAAGACCAGAAAGGAGCGCTGACCGGAGTGGCGAGCTGGGAGCACATTAAAGCCGTACGAGAAGCTGTGAACATCCCGGTTTTTGCTAACGGAAACATTCAGCACCTGAGTGACGTGCAGCGCTGCATGGCGGAGACGGGAGTGCAGGGCATCATGAGTGCAGAGGGGAACCTGCACAACCCGGCGCTGTTCGAGGGCCGTAACCCGCCTGTGTGGGAGGTGGTGGAGGAATATCTGGAGGTGGTGAAGAAACACACGCCCAGCACGCTATCACATGTCCGAGCTCATCTCTTTAAACTCTGGCATCACACGCTGCAGATCCATCAGGACCTGAGAGAAGATTTGGCCAAAGCAAAGAACCTGGCAGGAATTGAGGAGGTGAACAGACAGCTGAAGCAGCGCTGCCAGGAGGAGATGGGTAAGGATGAATCGGAGCGACATCAGACCGGACTGCCTTTTCCTCATTGGATCTGTCAGCCGTACGTCAGACCAGCGCCGAAGGATCCGAGCAGCGAGAACGGCGTGAAGGCGGTGAGCGGGAAAAGGGCGTTGGAGGACAGCGACAGCTCCAACGACTCGCTCTCCAAGAACAAGCAGAAGAAGAAAGTCAGGAACCCGCAGAAGAACTTCTGCCCCGAGCTCAAACCAAAGTACATCAAATGTGAGCAATGTGGGAATCCCAAAGGGAATAAGTGTGTCTTTAACCTGTGTCGTGGCTGCTGTAAGAAAAAGGCTTATAAGGAAGTCGCAGATTGTCCAGGTCACGGCTTGAGGTTCAAGACGAAAGCGCAGAAGCAGAAGGTCGCTGTCCAAACAGAGATATCGTCCTAAACCTCTGCGTCGCTCGAGTTCCGGCTCGGACTTTGCTAAGAGTTCGGTTTTAGCATCCGCACTGCAAACGCAACTCATGCTGTAAACGCAACAAAACGAGTGTATCTtactcacatacacatatgcatTGAAACCGAATACTGCTGCTGAAGAGTAAAAACTTATTACTACTTTAGAGGGGAACGAATTCcatacaggaaaacaatcacaCACGATTAAAATCTGTAACTTGCAGAGACTAAATTTTGTACGTAGGGTTTTCATGTAGCTGCAACTTGTAGCTACAACATTGTTTTagctaagccccgcccccaaagaCTTGCCAATATACTGTAAACCTCGGCGTTGTGGCTGTTTTACACTTCAATCCTCAGATATTAAACGGAACAGCTAGAATACAGGGCTAACTTATTTAAACTACGCAAACACCTTTTCTGTTTTAAcgggttttttaaaaattattaatttatttacatttaggttttttttttaaacataacagATACCcaatattttcacatgttcaatCAACACCAAAGTCAAATTTCAGTTTCTGCTGATGTTCTACATTTGCGACACTCACGCGGGAGAATGTTGACGCTCTTGGGAAATCAGGATATCATGTCAGAGCTGGATTTACCAGCACGTTATCTGAACACAGCTTGAAAATTGAAATCTAGTGTAGTATCCTCGAGGTACATGAAACTGCTGTTTTTCTGAGGATCATCTGTGACATTTccactgctttgtgtttttaacaTTGAGGTTTTTACAAtgaataaaacttttaaagTTCTTTTAAGCAA

Function

symbol description
dus1l Predicted to enable tRNA dihydrouridine synthase activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DUS1L (dihydrouridine synthase 1 like).

NR:

description
PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05542 DUS1; tRNA-dihydrouridine synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916172.2 False 2373 mRNA 0.48 15 3630440 3639871
XM_034309671.1 True 2377 mRNA 0.48 15 3630439 3639871
XM_034309672.1 False 2190 mRNA 0.48 14 3630849 3639871

Neighbor

gene id symbol gene type direction distance location
ppl ppl,LOC107720077 coding upstream 69761 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 130011 3485744 ~ 3500428 (+)
si:dkeyp-72e1.6 LOC108274424 coding upstream 146691 3480238 ~ 3483748 (+)
mpv17l LOC108256073 coding upstream 153114 3470453 ~ 3477325 (+)
LOC113528556 LOC108277488,LOC108437999,LOC107721491,LOC107720004,LOC107590377,LOC107688123,LOC107601225,LOC107654455 coding upstream 277587 3317323 ~ 3352852 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding downstream 45607 3685478 ~ 3692367 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding downstream 54858 3694729 ~ 3714082 (+)
slc16a6b LOC108259325 coding downstream 83892 3723763 ~ 3733885 (+)
LOC113528497 NA coding downstream 97589 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 107630 3747501 ~ 3756184 (+)
G204771 NA non-coding upstream 40408 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 227092 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 273533 3353298 ~ 3356906 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding upstream 411555 3215787 ~ 3218884 (+)
G204417 NA non-coding upstream 557713 3064905 ~ 3072726 (+)
G204790 NA non-coding downstream 5892 3645763 ~ 3646675 (+)
G204774 NA non-coding downstream 8318 3648189 ~ 3649538 (+)
G204773 NA non-coding downstream 33113 3672984 ~ 3715580 (+)
G204815 NA non-coding downstream 136733 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 213625 3853496 ~ 3882959 (+)
LOC113527909 NA other upstream 430306 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 617580 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 722396 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1444275 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1642524 1917205 ~ 1987915 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 326862 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 331308 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 980347 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1052606 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 1073002 4712873 ~ 4721468 (+)

Expression


Co-expression Network