sgf29 (sgf29)


Basic Information

Item Value
gene id sgf29
gene name sgf29
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9049773 ~ 9056443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916173.2
GCGTTTTCAAAACATGCCCTGCACAGCTTGTCCCTCCCAGGCTCCCGTACAAGGCCTAACCAACCCGATTCAAAACCGAAAATAAAGCTTCTAAACCGAGGCTCAATGGCTTTAGTGTCTGCAGATACCAAAATTGCTGAGCTGCTGAATGAGCTCCATCAACTAATCAAACAAACTCAGGAGGAGCGCTCACGCAGTGAACACAACCTACTGAACATCCAGAAGACACATGAAAGGATGCAGACAGAAAACAAAACTTCTCCATACTATCGGACAAAGCTGCGTGGACTGTACACCACAGCAAAAGCAGATGCAGAGGCTGAATGCAGTATATTGCGCCATGCTCTTGACAAGATTGCAGAAATTAAATCACTACTGGAGGAGAGACGTATTGCTGCACGGATGGCAGGGGTGTACAATGACAGCGACCCACCCAGGAAGACCATGCGCAGAGGTGTTCTGATGACCCTGTTACAGCAATCTGCAATGACGCTTCCTCTATGGATTGGCAAACCAGGTGAAAGTCCACCCCCTCTGTGTGGAGCGATGCCTGCGAGCAGTGACTACGTGGCTAAGCAGGGTGATAAGGTGGCAGCTCGGGTGAAGGCTGTGGATGGTGATGAACAGTGGATTCTGGCTGAAGTGGTCAGCTACAACCACTCCACCAACAAGTATGAAGTGGATGACATTGACGAGGAAGGAAAGGAGAGACACACTCTAAGTCGAAGAAGAATCATCCCACTGCCACAATGGAAAGCCAACCCAGAGACAGACCCTGAGGCACTGTTCAGCAAAGATCAGCTGGTGCTGGCTCTCTACCCACAAACCACCTGCTTCTACAGAGCCCTGATTCATAACCCCCCACACCGGCCCCAGGATGACTACTCGGTGCTGTTTGAAGACACGTCCTATGCAGACGGCTACTCACCGCCTCTCAACGTAGCCCAAAGATACGTAGTGGCCTGCAAGGAGAACAAGAAAAAGTGAGGAAGAGGATTGAGTGGATGGAGATCTGGACCTGATTAAGTGGTCTTTAAGTAGGAGGACTGATGTAGAATCAGACTTCTGCTGCATATAGTCACTACGTCACCAAATGCATCTGAGACCAGGACTCAATCTGAAATGACTGAATACCAGCTCCGATGAAAACGTACCTGGGATGGCCtaaatatgtgtttatatttgtacatGACTCTTGGATTATCATTGGTATGAATGGTGAAATAGCATAATTTGTGGTATGTGTAGATCATATGTTTTTTGTACAACATTCCTGTCAGTGTGGGGCCAAAGAAAAGGACTGcagatatacattttaacaaaataaaagagaaaaaaattttcTAGA

Function

symbol description
sgf29 Predicted to enable methylated histone binding activity. Predicted to be involved in histone H3 acetylation. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human SGF29 (SAGA complex associated factor 29).

NR:

description
PREDICTED: SAGA-associated factor 29 homolog

GO: NA

KEGG:

id description
K11364 SGF29; SAGA-associated factor 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916173.2 True 1348 mRNA 0.47 10 9049773 9056443

Neighbor

gene id symbol gene type direction distance location
nfatc2ip NA coding downstream 682 9045645 ~ 9049091 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding downstream 5637 9032844 ~ 9044136 (-)
lat LOC108257259 coding downstream 17741 9022546 ~ 9032032 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 66396 8973287 ~ 8983377 (-)
sez6l2 sez6l2,LOC107660756 coding downstream 96454 8937563 ~ 8953319 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 47858 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 88131 9144574 ~ 9152008 (-)
LOC113527879 LOC108274494,LOC107552447 coding upstream 101933 9158376 ~ 9166233 (-)
mvp mvp,LOC107739398 coding upstream 111939 9168382 ~ 9184513 (-)
trnav-cac_10 NA coding upstream 131077 9187520 ~ 9187592 (-)
G208153 NA non-coding downstream 18795 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 24790 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 42514 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 91562 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 93376 8955866 ~ 8956397 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 5137 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 46468 9102911 ~ 9103126 (-)
LOC117598997 NA non-coding upstream 385543 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 438180 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 690053 9746496 ~ 9748039 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 336455 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 759965 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 765181 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 782135 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1344281 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 56523 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 140053 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 353361 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 407888 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 673408 9729851 ~ 9732566 (-)

Expression


Co-expression Network