tmem11 (tmem11,LOC107568541,LOC107661149,LOC107552488)


Basic Information

Item Value
gene id tmem11
gene name tmem11,LOC107568541,LOC107661149,LOC107552488
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7419697 ~ 7423186 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916176.2
CGCATAAAAACACAATGAGGAGAAGACTACGCTACCCATAGTGCATcgctacaatttttttttacgtcAACGGCAACGCGCTGGTTCTCCAAGATGGCGGCGTTGGGAAGGAGGCGCGGTGTCCCAGTCAACAGGGAGAGGGGAGTGATGGCGGCGGCGGGCGAGTGTTACATCGTGCACGAGATCTACAATGGTGAGAATGCGCAGGAGCAGTTTGAGTATGAGCTGGAGCAGGCCCTGGAGGCACAATATCCCTACATTGTCATTGAGCCGACGCGCATTGGGGACGAGACGGCGCGCTGGGTGGCCGTGGGGAACTGCCTGCACAAGACGGCCGTACTAGCGGGCGCCGCATGTCTCTTTACACCGCTGGCACTGCCTGCTGATTATTCTCGCTACGTAGCTCTGCCCGCCGGCGCCCTCAGCCTGGCCTGCGCCGCTCTCTACGGCATCTCGTGGCAGTTCGACCCGTGCTGCAAGTACCAGGTGGAGTACGACAGCCGGAAGCTCGCGCGCCTGCCGCTGCACACGCTCACCTCATCCACGCCCGTGGTGCTGGTGCGCCGCGACGACGTGCAcagaaagagactgcacaacACAATAGCGCTCGCCGCCCTGGCCTACTGCGCCAAGAAGATCTATGAACTGTACGCCGTATGAACGTACACACGCGCACAACACACACGTACTGAtacatcatctcacacacatgtacacacacatacacatgctgaGAGGGAGGTGAGAAGCACTactaaatacaaacacaaacgtGACAGAAAGCCAAAAGGCAGATGGATGCAGGGACGGAGAGAGCGATCACCCAGAACGGGAAGAACCTAGCAGCGCTCTCTTCTTCACTTTTTTCCCATCTGTGCGCTTCAATGGAGGAACGAAATGCCGGGAGGGATGGGAGGATGAATGGATGAGAAGACGGTGCAGGGGGTGGGGGTTATGGTTTATTGGAGAAGTAAGATTCTTCCCCCCCCCTTTCCTGCACTGTTAAGTGACATCAGCAATGCACTTGACAACCCCGTCccctccttttctctccttATCCCTGGCTGAGCTCCTGCACCTGTGCAGCAACTGTCAGACCGTGACCGCATGGTGGACAGGCgaacacacagacatgttttAAGTATTACTTTGAagccctctctctcccctcccctgTGTAGTTTTACTGTACCCTGCCTTGGTGCATCACCTTTTCATTAAACAGTAGGAGATTTAACCTCA
>XM_026916177.2
TGCTAAACCTCACGTAGTGCGCTGCTACAGGGGGAGACAGTGAGCGGAAGGCTGCACGTGTGGCCGAGTACCGAGCACTAGCTGCTTATATCGCCTCCTCGCGTGCGCGTGCCAGCTCGGTGAGCGTCGCGCGACAGCCGACGGGTGCAGACCTCAGTGCTGAAGCGTGGGAAGAACACAGTATGGGGGAGTGATGGCGGCGGCGGGCGAGTGTTACATCGTGCACGAGATCTACAATGGTGAGAATGCGCAGGAGCAGTTTGAGTATGAGCTGGAGCAGGCCCTGGAGGCACAATATCCCTACATTGTCATTGAGCCGACGCGCATTGGGGACGAGACGGCGCGCTGGGTGGCCGTGGGGAACTGCCTGCACAAGACGGCCGTACTAGCGGGCGCCGCATGTCTCTTTACACCGCTGGCACTGCCTGCTGATTATTCTCGCTACGTAGCTCTGCCCGCCGGCGCCCTCAGCCTGGCCTGCGCCGCTCTCTACGGCATCTCGTGGCAGTTCGACCCGTGCTGCAAGTACCAGGTGGAGTACGACAGCCGGAAGCTCGCGCGCCTGCCGCTGCACACGCTCACCTCATCCACGCCCGTGGTGCTGGTGCGCCGCGACGACGTGCAcagaaagagactgcacaacACAATAGCGCTCGCCGCCCTGGCCTACTGCGCCAAGAAGATCTATGAACTGTACGCCGTATGAACGTACACACGCGCACAACACACACGTACTGAtacatcatctcacacacatgtacacacacatacacatgctgaGAGGGAGGTGAGAAGCACTactaaatacaaacacaaacgtGACAGAAAGCCAAAAGGCAGATGGATGCAGGGACGGAGAGAGCGATCACCCAGAACGGGAAGAACCTAGCAGCGCTCTCTTCTTCACTTTTTTCCCATCTGTGCGCTTCAATGGAGGAACGAAATGCCGGGAGGGATGGGAGGATGAATGGATGAGAAGACGGTGCAGGGGGTGGGGGTTATGGTTTATTGGAGAAGTAAGATTCTTCCCCCCCCCTTTCCTGCACTGTTAAGTGACATCAGCAATGCACTTGACAACCCCGTCccctccttttctctccttATCCCTGGCTGAGCTCCTGCACCTGTGCAGCAACTGTCAGACCGTGACCGCATGGTGGACAGGCgaacacacagacatgttttAAGTATTACTTTGAagccctctctctcccctcccctgTGTAGTTTTACTGTACCCTGCCTTGGTGCATCACCTTTTCATTAAACAGTAGGAGATTTAACCTCA

Function

symbol description
tmem11 Predicted to be involved in inner mitochondrial membrane organization. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human TMEM11 (transmembrane protein 11).

NR:

description
PREDICTED: transmembrane protein 11, mitochondrial isoform X1

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916176.2 False 1242 mRNA 0.55 2 7419697 7422602
XM_026916177.2 True 1288 mRNA 0.57 2 7419697 7423186

Neighbor

gene id symbol gene type direction distance location
jpt2 hn1l coding downstream 31303 7381596 ~ 7388394 (-)
mapk8ip3 mapk8ip3 coding downstream 43667 7334913 ~ 7376030 (-)
trnac-gca_20 NA coding downstream 145320 7274306 ~ 7274377 (-)
trnac-gca_19 NA coding downstream 146569 7273057 ~ 7273128 (-)
trnac-gca_17 NA coding downstream 147371 7272255 ~ 7272326 (-)
phospho1 phospho1 coding upstream 8805 7431991 ~ 7437181 (-)
znf652 znf652,LOC108258819,LOC106607259 coding upstream 23377 7446563 ~ 7467835 (-)
phb phb,LOC107661032 coding upstream 50326 7473512 ~ 7480256 (-)
LOC113528501 cq072 coding upstream 538588 7961774 ~ 7967990 (-)
rprml LOC108261071 coding upstream 561283 7984469 ~ 7985822 (-)
G207254 NA non-coding downstream 106042 7312082 ~ 7313655 (-)
G207205 cacnb1,LOC108413880 non-coding downstream 157584 7255625 ~ 7262113 (-)
G207227 NA non-coding downstream 178790 7240241 ~ 7240907 (-)
G207226 NA non-coding downstream 181816 7237673 ~ 7237881 (-)
G207221 NA non-coding downstream 192033 7227385 ~ 7227664 (-)
G207540 NA non-coding upstream 520492 7943678 ~ 7948171 (-)
G207565 NA non-coding upstream 606020 8029206 ~ 8029449 (-)
G207571 NA non-coding upstream 610096 8033282 ~ 8036848 (-)
G207653 mrc2 non-coding upstream 687472 8110658 ~ 8114574 (-)
G207650 NA non-coding upstream 753172 8176358 ~ 8200778 (-)
G207231 spsb3 other downstream 97735 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 693532 6646058 ~ 6726165 (-)
G206604 NA other downstream 1224701 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 1458647 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 1468700 5940862 ~ 5950997 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 2531 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 136581 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 826699 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 856581 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 861288 8284474 ~ 8284592 (-)

Expression


Co-expression Network