ube2ka (ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169)


Basic Information

Item Value
gene id ube2ka
gene name ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21157480 ~ 21163061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916178.2
acacacacacacacacacacacactctctctctcacacacacacacacacatacatacacacacacacacacatacacacacacacagagcagcatgGCTAACATCGCAGTGCAGAGGATAAAACGAGAATTTAAAGAAGTCCTTAAAAGCGAAGAGACGAGTAAAAACCAGATTAAAGTCGACCTGGTGGATGAGAACTTCACAGAACTGAAGGGGGAGATCGCAGGACCGCCTGACACACCTTACGAAGGTGGTCGATACCAGCTAGAAATTAAAATTCCAGAAACATATCCCTTCAATCCTCCAAAGGTACGGTTTATTACAAAGATCTGGCATCCCAACATCAGCTCAGTAACTGGTGCCATATGTCTGGATATTTTAAAGGACCAGTGggcgGCGGCCATGACGCTCCGGACAGTGCTGCTGTCCCTACAGGCTTTATTGGCAGCAGCAGAACCAGACGACCCACAGGATGCAGTGGTGGCCAATCAGTATAAGCAGAACCCAGAGATGTTTAAGCAGACGGCTCGGCTCTGGTCACACGTTTACGCAGGTGCACCAGTCTCCAGTCCAGACTACACGCGTAAAATAGACAAACTGTGTGCTATGGGCTTCGATAAAaacgCAGTAATAGTGGCATTGTCGTCAAAATCCTGGGATGTGGAGACGGCAACGGAGTTGTTGCTTAGCAACTGAACCTACAGCACCCTGTTCACCACCCACACCCTTGACTCCGCCCATGTCCAAGTCGGATTCACTTCCTGTATGGAAATATTGCACCTTGATTCCCCACCCAACACACTGCATTTACGTGTCccttccatctttctctctctccatctgaaATTACAGTCTTTTCCTAAACTCTCACTCCTTCATCTTTCCATCTTCTCAcactttttgttgttctttttcacCTTTTTGAGTTAAGTGTACCTTTCCCTCAACAGTATTCCCTATTTCTCCCCTTTATCATTGTCATCCTCTGTATCCTCCTCATACTGATCATGTGATTCTTACCACAGTGCTGGACATTCCCATACTGCTCCCTCCTCCATTTTGCACAATCATTCAAGCTCTTTTATGTGGAATCCCATTTCTACGATGCcagtaaatcaaataaatacaaataaaaaaaaaaaaaaaaagacacaaacatCACTCTCACATGTGACACAGATAATGTTATCTCAAAAGATCAAAACTggaatacaatttaaaaaaaaaaaaaaaaaaaaaaa
>XM_034309861.1
ACTCATACAAGAAGCAGAGCTCCTGCATCCCTTAAATCCCAGTTTAACCCCTGAACCTggttttgttcatattttatcGTGAAAACCGGTTTTCAGTATCGATTCACACCGAAACGACGCTGAAgcatgagaggagaggagggggcTACGAGTAAAAACCAGATTAAAGTCGACCTGGTGGATGAGAACTTCACAGAACTGAAGGGGGAGATCGCAGGACCGCCTGACACACCTTACGAAGGTGGTCGATACCAGCTAGAAATTAAAATTCCAGAAACATATCCCTTCAATCCTCCAAAGGTACGGTTTATTACAAAGATCTGGCATCCCAACATCAGCTCAGTAACTGGTGCCATATGTCTGGATATTTTAAAGGACCAGTGggcgGCGGCCATGACGCTCCGGACAGTGCTGCTGTCCCTACAGGCTTTATTGGCAGCAGCAGAACCAGACGACCCACAGGATGCAGTGGTGGCCAATCAGTATAAGCAGAACCCAGAGATGTTTAAGCAGACGGCTCGGCTCTGGTCACACGTTTACGCAGGTGCACCAGTCTCCAGTCCAGACTACACGCGTAAAATAGACAAACTGTGTGCTATGGGCTTCGATAAAaacgCAGTAATAGTGGCATTGTCGTCAAAATCCTGGGATGTGGAGACGGCAACGGAGTTGTTGCTTAGCAACTGAACCTACAGCACCCTGTTCACCACCCACACCCTTGACTCCGCCCATGTCCAAGTCGGATTCACTTCCTGTATGGAAATATTGCACCTTGATTCCCCACCCAACACACTGCATTTACGTGTCccttccatctttctctctctccatctgaaATTACAGTCTTTTCCTAAACTCTCACTCCTTCATCTTTCCATCTTCTCAcactttttgttgttctttttcacCTTTTTGAGTTAAGTGTACCTTTCCCTCAACAGTATTCCCTATTTCTCCCCTTTATCATTGTCATCCTCTGTATCCTCCTCATACTGATCATGTGATTCTTACCACAGTGCTGGACATTCCCATACTGCTCCCTCCTCCATTTTGCACAATCATTCAAGCTCTTTTATGTGGAATCCCATTTCTACGATGCcagtaaatcaaataaatacaaataaaaaaaaaaaaaaaaagacacaaacatCACTCTCACATGTGACACAGATAATGTTATCTCAAAAGATCAAAACTggaatacaatttaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
ube2kb Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be active in nucleus. Is expressed in lens. Orthologous to human UBE2K (ubiquitin conjugating enzyme E2 K).
ube2k Enables ubiquitin protein ligase binding activity and ubiquitin-ubiquitin ligase activity. Involved in several processes, including cellular response to interferon-beta; free ubiquitin chain polymerization; and positive regulation of cytokine-mediated signaling pathway. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 K

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916178.2 True 1242 mRNA 0.44 7 21157480 21162875
XM_034309861.1 False 1232 mRNA 0.44 7 21157480 21163061

Neighbor

gene id symbol gene type direction distance location
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding downstream 1680 21147066 ~ 21155800 (-)
LOC113528290 LOC108273900 coding downstream 13617 21082019 ~ 21143863 (-)
spata5 spata5 coding downstream 154003 20904524 ~ 21003477 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding downstream 460320 20607624 ~ 20697160 (-)
LOC113528321 fbxl12 coding downstream 726965 20426759 ~ 20430515 (-)
klb klb coding upstream 2790 21165851 ~ 21174532 (-)
ints10 ints10,LOC105894096,LOC105894103 coding upstream 21901 21184962 ~ 21201869 (-)
arl9 arl9 coding upstream 197501 21360562 ~ 21367112 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding upstream 205693 21368754 ~ 21380216 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding upstream 423037 21586098 ~ 21613875 (-)
G214626 NA non-coding downstream 253643 20903098 ~ 20903837 (-)
G214526 NA non-coding downstream 315846 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 375778 20778765 ~ 20781702 (-)
G214331 NA non-coding downstream 711732 20445523 ~ 20445748 (-)
G214325 NA non-coding downstream 718646 20436052 ~ 20438834 (-)
G214917 NA non-coding upstream 164599 21327660 ~ 21329675 (-)
G214933 NA non-coding upstream 196636 21359697 ~ 21359899 (-)
G214941 NA non-coding upstream 243809 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 256707 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 272533 21435594 ~ 21505792 (-)
fgf2 fgf2,LOC107717315 other downstream 129399 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 252209 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 943851 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 1019267 20039787 ~ 20138213 (-)
lyar lyar other downstream 1173331 19940354 ~ 19984149 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 73741 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 189220 21352281 ~ 21359190 (-)
G215187 NA other upstream 513210 21676271 ~ 22269092 (-)
G215188 NA other upstream 522643 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 531811 21694872 ~ 21695359 (-)

Expression


Co-expression Network