hrob (LOC108259294)


Basic Information

Item Value
gene id hrob
gene name LOC108259294
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5096322 ~ 5103874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916179.2
CaccttttttatgtaaatattggcaatgtctttaattttgcagtgtaatttaatcaaaattctTCAATAGAAACCTGCGGAAAGCTGTTCGTTAGTCAAGTGTAGTCAAGTGTGTTAAAGTAGGCGATCAGATGTCAggataaatggaaatgaatcttCTTAATCAAGCACAGACACAGTAGGGCACAATGACGTTAGTACAGgggtgtttattgtgtttgcCAATGTCATGCTgattatttacaattatttaaacgGGTTTTACAAAATGCcggtttggaaaaaaaattgaaatatgcggtttaagaaagaagaagaaagaatcGACTCTTACTGTTCAACCGAGCCAAATGATCCGAATCGCTGAAAAGAGCCGGAATTCCCATAGCGACAGTAAAGAGCAACGgggaagccccgcccacttccttGTTCGTCATCACGTAACATCACGCTGTTTTCGAACGTGGCGGCGCCGAGCTGGAAATCCGCCCTGGTGGATGTTTTTTTGGATAAGATTTTGCGTgcaaattatacattttgagAGATGTGAAGACGCGGTAGCCTTTAGTAAGGATTATATATCAGCTAATCCTCTCTTTCTGAAGTCTAAACTAAACTGGAGGACATGACAACTGCGGCTTGCAGCAAGTGGAGAGGACTTTTCAGCGTAGGAGAAGATCTGGATGATGAAGACTTGCTGGATGCTGACTGGACACACACGTCTGCTTCTGGGTCATCTGCAGTTCCAGCCTGTGCACCCTTACAAGAATCGCATGCAGTTTGTTCCCATGATGCACAGCAGAGCTCCAATGCACCATCAGCCACCTTCTCAAACAGGAGTTCAGTGCCAGACTCTTCAGCACGACTTTCAGATCTTTCAGAATCCAGACCTGTCAAAGGTTTAAGAAGCCTGGCCAATCCTAACTCTTTATCCGTCTCCCACTCTGTCCCTCGCACACCCTCTGCTTCTCTTGCTTCTCTTCAATCACCTTCTGGGGGCTCTAATGCAATCTCATCTCTGCAATATCCCTTAAATTCTCCACCTGACGAGTCAAACCCTCAATCTGGCACCTGCAATGTTCCCAAGAAAGACATTCCAGCTCAAGATGACTTTGATGACTGGGATGTAGATCTGGAGGAGTTGGATGAGTGTGTTCCTCAGAAAGCTTCTGCTCCAGACACAGAATATGAATCTGACAACATTTCCCCAGCTAAACGGACGAGATTATCAGCTGTTAGTGAAGATGTACCAGTTGTATCTTCTCTCAGAGGATTCTGCAACACTACTCTGAAATCTGCACCCCCACAGTCCTTTATCCGTTCCCCGTGTTCTGCTACGTTTTTCCCACAAAACAACTTGCAACCCTCTGTACCTCCAGTCTGCCGCTTCACCAGTCCAGTGACTCCTGGACCTGTGAGAGCGACATCTCAGTGGCAAAGAGGAGTTGTTACTCCTCGAGCAGAACATCGTTCTCTGTTTCAGGCTGTTTCTCCTGCTCCGTTGACTCCACAAACACCCCATCCACTCCACATGCCCGTCCTGACTAATCACCTGGTCCAGCTGGTGTCTGCAGCCAGTAAGACGCCTCAGAGGCCAAGGAGTGATTCTGTTCGGCCCAAAACGCGACGGTTTCCTGGTCCAGCGGGTGCTCTGCCGCAACAGATCAGTGGGCGGAGTCTGGATGACATCATTGTGGCAGTTCCACAGACACCAGCACACGGGGCTGTGGCTCGCCTGCGCAGTGAGGTCCCGAGCTCTCAAGTAAATGATGAAGAGGAGTTCAGTGTAGGTCCGTGGGCAGCAATGAAGGCTGAGATGGGACTGGATGAGAGAAACCCTTCCTGTTTCCTCCATTCATACAGCATTGTTATGGTGCTGCGGAAAGCGGCCTTAAGGCAGCTCTCTAAGAATAAGGTTCCTAACATGGCCGTGGTGTTAAAgagcatcatacacacacatgctgacgCCAAAGCAGTGTTCAGAGACCCCACAGGTGAGATGCAGGGTACAGTTCACAGACGGTTGCTGGAGGACAGACAGGGGGAGCTAAAGACTGGTGCAGTGCTGCTTCTCAAACAAGTGGGCGTGTTCTCCCCCTCTAATAGGAACCATTACCTGAATGTAACACCCAATAACCTTCTTCGAATCTACCCTCCTGGCGGAGCAGTCCACGCCTCCTCCCAGCATTCCCAGCCTGCACTGGAACCTGCTGGATTACTGCATTGTGAGTCCTCAAAGCCTGACGAATGCCCTGTGTCTCAGATGGAGCTgcattatgatgatgatgatgaggaggaggagcagagcAGCATCCCGGctaaacttacagttccagctaATGGGGTGGTTCAGTCTACTACACGACCTGACTGCTCAGAGGATGCTCAGTGGGATGCAGATGATCTCGATGAGCTGCTTGGGGAGTTGCCTGTGGAGTCCTACTCTGCCTGACGCTGACACCATTACCATAGAAATCTACCAGACCACAGCCAAATGGCttagctgtgcttttttttttgttcaatttgTGTATAGAAGTTGTTGTAAGATATGTACATAATCAGAAAGCAGTTGTCTAGACAAGATGAAGAATAAATGTTTGACTTTGAACTGTC

Function

NR:

description
PREDICTED: uncharacterized protein C17orf53 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916179.2 True 2616 mRNA 0.48 10 5096322 5103874

Neighbor

gene id symbol gene type direction distance location
rps11 rps11,LOC107674708 coding upstream 4505 5089263 ~ 5091817 (+)
LOC113528649 NA coding upstream 4990 5091248 ~ 5091332 (+)
LOC113528650 NA coding upstream 5406 5090832 ~ 5090916 (+)
LOC113528648 NA coding upstream 5718 5090520 ~ 5090604 (+)
LOC113528651 NA coding upstream 6039 5090198 ~ 5090283 (+)
asic2 asic2,LOC108411330,LOC107654528,LOC107674665,LOC107720021,LOC107737939 coding downstream 4547 5108421 ~ 5626980 (+)
kcnj19a si:dkey-106c17.3,LOC108274233,LOC108432058,LOC107581800,LOC107654469,LOC107737881,LOC107674737 coding downstream 684847 5788721 ~ 5824200 (+)
LOC113528511 NA coding downstream 920422 6024296 ~ 6025839 (+)
zgc:100868 NA coding downstream 1015619 6119493 ~ 6128811 (+)
cln3 cln3 coding downstream 1034226 6138100 ~ 6147618 (+)
G205454 NA non-coding upstream 15118 5079987 ~ 5081204 (+)
G205436 NA non-coding upstream 98526 4894540 ~ 4997796 (+)
LOC117598842 NA non-coding upstream 170640 4923914 ~ 4925682 (+)
G205315 NA non-coding upstream 423293 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 532668 4563408 ~ 4563654 (+)
G206157 NA non-coding downstream 525584 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 631496 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 650978 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 764988 5868862 ~ 5869806 (+)
G206289 NA non-coding downstream 814571 5918445 ~ 5925185 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other upstream 81806 5003548 ~ 5014516 (+)
psmc3ip psmc3ip other upstream 374854 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 385006 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 425676 4620218 ~ 4670646 (+)
trnae-cuc_26 NA other upstream 1125072 3971179 ~ 3971250 (+)
G206166 NA other downstream 553738 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 785678 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1026906 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1056460 6160334 ~ 6175366 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other downstream 1076222 6180096 ~ 6194964 (+)

Expression


Co-expression Network