spop (spop,LOC107754841,LOC100710366)


Basic Information

Item Value
gene id spop
gene name spop,LOC107754841,LOC100710366
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8566771 ~ 8660121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916186.2
gaataaaaataatcggctattgcacctttaaacccTGGAGTTGAGAGCTCGTGCACCtcagtgtgtgcgtgcgcgcggcCGAGTGTCGTCACGCGCTTTAACCCGGACGTGAAGCAgcgcaacagaaaaaaaaaatatccgaTACGGTCgaagaaaagattaaaaaaagGTTCCTGAGAGGAAAACCGGAACAGCACACTACTGAGACATAGAgacagatatatacacacaccgcCCCGACCTATGGGGAGAGAGACGGAgtgactgagacacacactcacctggcTTGGCAATGGATACACCTGCCTCACCAGATGTTTAATGGACTTTGATCTGAAATAGgTTCTCCTGTAGCAGAGAAAGTTCTCTCAGTGTTCCATCGCTGTTCTTTGGGTGCCTCTGTACCCCAGCGTGTACTCACCACTATTGACAGCTGAGGTGTCACAGCTTGGTGCTTCTGAGAGAGTGTGAGGAAGTCCTCTTGctcagagggagagagtgtgtgtgtgtgtgtgtgtgtgggtctgtcaTCTGCTGGTAGGTGTCGTGCCCCGCCTCACCCCACACACTCAAAGCTGGCGATGTCCAGGGTCCCGAGTCCGCCCCCTCCCGCTGAGATGACCAGCGGCCCCGTGGCTGAGAGCTGGTGttacacacagATCAAAGTAGTGAAGTTCTCCTATATGTGGACCATCAACAACTTCAGCTTCTGTCGGGAGGAGATGGGCGAGGTCATCAAAAGCTCCACCTTCTCCTCGGGAGCAAACGACAAACTCAAATGGTGTTTGCGGGTGAATCCGAAAGGATTGGATGAAGAGAGTAAAGATTACTTGTCCCTCTATTTGCTCCTGGTAAGCTGTCCCAAGAGTGAAGTGCGTGCAAAGTTTAAGTTCTCCATCCTCAATGCTAAGGGCGAGGAGACCAAAGCCATGGAGAGTCAGCGGGCCTACAGATTCGTGCAAGGCAAAGACTGGGGCTTCAAGAAGTTTATAAGGAGGGACTTCCTGCTGGATGAGGCCAATGGGCTGCTACCTGACGACAAACTGACACTATTCTGTGAGgtcagcGTGGTGCAGGACTCGGTGAACATCTCTGGACAGAACACGATGAACATGGTGAAGGTTCCGGACTGCAGACTGGCTGATGAGCTGGGTGGGTTGTGGGAACATTCTCGCTTCACAGACTGTTCACTCTGCGTCGCTGGCCAGGAGTTTCAGGCACACAAAGCAATCCtagcagCTCGTTCTCCTGTTTTCAGCGCCATGTTCGAGCATGAAATGGAGGAGAGCAaaaagAACCGAGTGGAGATTAATGACGTGGAGCCCGAAGTGTTTAAGGAGATGATGTGTTTTATCTACACCGGGAAAGCACCCAACCTGGACAAGATGGCCGATGAcctgcttgctgctgctgacaagTATGCTCTGGAGCGCTTGAAGGTGATGTGTGAAGACGCTCTGTGTACGAGTCTGTCTGTGGAGAACGCTGCTGAGATCCTGATTCTGGCTGACCTGCACAGTGCCGATCAGCTCAAAACTCAAGCCGTCGACTTCATCAACTAccATGCATCAGATGTGATGGAGACATCTGGCTGGAAGTCCATGGTGGCATCTCACCCTCACCTGGTTGCGGAGGCATACCGTTCCCTGGCATCGGCCCAGTGCCCCTTCCTGGGCCCACCCCGAAAGCGCCTCAAACAGTCATAGTGCCCTTAGCTTTAAACCACCCACCCCCCTTGACAGGACTGCCCACATGGAGGCGCCATTCTTAAATTTACCCCTTAACTTCTAAATATACTCCCTGTAGGGACTCTAGCCAACCCTTGATCCCGAGGTACTGTGTTCTGTAGCGTCCCTCCCTGTCCTCCTCAACGTCCTCAGCCCAATAACCCAGGTGCGCCAGGGAACCTCCAGCAGAACGATCATCAATAGAGGCAGTGCTGTACCCGAGGGTTCTTCCCAGCTCTGCTCCCTCCTCGACTCCCCAACTGCCCAGCCTAACCAGGATAAGCGAGCTTTCATTGGGATCCTGGAGACGATGGTGTCTACAGattggatgaatggatgggcAAGATGGATGGTGACTACAAATACAGGACACAAGGACACTATCGGTGGACTGTGACCTTCCCCACTGTCCCCTGCGATGGATTCTCCTTTACCGTGTGCGTCATTTGTTCCCTTTCTCAGTGACAGACGGATTTTAGGATGAGAAAAACAACCCAGCTATTTTTGGGGAACTGCAGCGCTTTTAAATAGGTAGCTTGTCTCCTTATGATGACATCAGCATTTCGTTCAGATGTTCAAGTAGGTCATGTGTCTCTTTTTGATGACATTTTTCCCCTCAACCTGTCGCAAGTGTAAGATCCTGAAGAAAGTGACTTTTACCAAACCTTTCTTGCTGGCGTCCTCTGACCCGACTCCTGATTGGCCAGTTGGAGAATAAGAGGCGCAGGTGGACTTCCTGTACATCTCCTGTGTATTGGAGAGTGCGTGATGGCACAGATTGATGGAAGAGGGTTGAAAGAAGGGGAGTGTGTAAATACGAGGTTATATTTCTTTTGATGTTTATTTGAGATTTTCTCCTCCTTGTAGCACTTCTGTATTTAAACCCAGGCTTTCtgtatgaaaacaaaaactacaaaaaaaaaagataataaactTGGCTGTGCTCA
>XM_034309852.1
GATGTCCTCCTTATTTCCGGTTCCTGAGAGGAAAACCGGAACAGCACACTACTGAGACATAGAgacagatatatacacacaccgcCCCGACCTATGGGGAGAGAGACGGAgtgactgagacacacactcacctggcTTGGCAATGGATACACCTGCCTCACCAGATGTTTAATGGACTTTGATCTGAAATAGgTTCTCCTGTAGCAGAGAAAGTTCTCTCAGTGTTCCATCGCTGTTCTTTGGGTGCCTCTGTACCCCAGCGTGTACTCACCACTATTGACAGCTGAGGTGTCACAGCTTGGTGCTTCTGAGAGAGTGTGAGGAAGTCCTCTTGctcagagggagagagtgtgtgtgtgtgtgtgtgtgtgggtctgtcaTCTGCTGGTAGGTGTCGTGCCCCGCCTCACCCCACACACTCAAAGCTGGCGATGTCCAGGGTCCCGAGTCCGCCCCCTCCCGCTGAGATGACCAGCGGCCCCGTGGCTGAGAGCTGGTGttacacacagATCAAAGTAGTGAAGTTCTCCTATATGTGGACCATCAACAACTTCAGCTTCTGTCGGGAGGAGATGGGCGAGGTCATCAAAAGCTCCACCTTCTCCTCGGGAGCAAACGACAAACTCAAATGGTGTTTGCGGGTGAATCCGAAAGGATTGGATGAAGAGAGTAAAGATTACTTGTCCCTCTATTTGCTCCTGGTAAGCTGTCCCAAGAGTGAAGTGCGTGCAAAGTTTAAGTTCTCCATCCTCAATGCTAAGGGCGAGGAGACCAAAGCCATGGAGAGTCAGCGGGCCTACAGATTCGTGCAAGGCAAAGACTGGGGCTTCAAGAAGTTTATAAGGAGGGACTTCCTGCTGGATGAGGCCAATGGGCTGCTACCTGACGACAAACTGACACTATTCTGTGAGgtcagcGTGGTGCAGGACTCGGTGAACATCTCTGGACAGAACACGATGAACATGGTGAAGGTTCCGGACTGCAGACTGGCTGATGAGCTGGGTGGGTTGTGGGAACATTCTCGCTTCACAGACTGTTCACTCTGCGTCGCTGGCCAGGAGTTTCAGGCACACAAAGCAATCCtagcagCTCGTTCTCCTGTTTTCAGCGCCATGTTCGAGCATGAAATGGAGGAGAGCAaaaagAACCGAGTGGAGATTAATGACGTGGAGCCCGAAGTGTTTAAGGAGATGATGTGTTTTATCTACACCGGGAAAGCACCCAACCTGGACAAGATGGCCGATGAcctgcttgctgctgctgacaagTATGCTCTGGAGCGCTTGAAGGTGATGTGTGAAGACGCTCTGTGTACGAGTCTGTCTGTGGAGAACGCTGCTGAGATCCTGATTCTGGCTGACCTGCACAGTGCCGATCAGCTCAAAACTCAAGCCGTCGACTTCATCAACTAccATGCATCAGATGTGATGGAGACATCTGGCTGGAAGTCCATGGTGGCATCTCACCCTCACCTGGTTGCGGAGGCATACCGTTCCCTGGCATCGGCCCAGTGCCCCTTCCTGGGCCCACCCCGAAAGCGCCTCAAACAGTCATAGTGCCCTTAGCTTTAAACCACCCACCCCCCTTGACAGGACTGCCCACATGGAGGCGCCATTCTTAAATTTACCCCTTAACTTCTAAATATACTCCCTGTAGGGACTCTAGCCAACCCTTGATCCCGAGGTACTGTGTTCTGTAGCGTCCCTCCCTGTCCTCCTCAACGTCCTCAGCCCAATAACCCAGGTGCGCCAGGGAACCTCCAGCAGAACGATCATCAATAGAGGCAGTGCTGTACCCGAGGGTTCTTCCCAGCTCTGCTCCCTCCTCGACTCCCCAACTGCCCAGCCTAACCAGGATAAGCGAGCTTTCATTGGGATCCTGGAGACGATGGTGTCTACAGattggatgaatggatgggcAAGATGGATGGTGACTACAAATACAGGACACAAGGACACTATCGGTGGACTGTGACCTTCCCCACTGTCCCCTGCGATGGATTCTCCTTTACCGTGTGCGTCATTTGTTCCCTTTCTCAGTGACAGACGGATTTTAGGATGAGAAAAACAACCCAGCTATTTTTGGGGAACTGCAGCGCTTTTAAATAGGTAGCTTGTCTCCTTATGATGACATCAGCATTTCGTTCAGATGTTCAAGTAGGTCATGTGTCTCTTTTTGATGACATTTTTCCCCTCAACCTGTCGCAAGTGTAAGATCCTGAAGAAAGTGACTTTTACCAAACCTTTCTTGCTGGCGTCCTCTGACCCGACTCCTGATTGGCCAGTTGGAGAATAAGAGGCGCAGGTGGACTTCCTGTACATCTCCTGTGTATTGGAGAGTGCGTGATGGCACAGATTGATGGAAGAGGGTTGAAAGAAGGGGAGTGTGTAAATACGAGGTTATATTTCTTTTGATGTTTATTTGAGATTTTCTCCTCCTTGTAGCACTTCTGTATTTAAACCCAGGCTTTCtgtatgaaaacaaaaactacaaaaaaaaaagataataaactTGGCTGTGCTCA

Function

symbol description
spop Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of proteolysis. Predicted to be located in nuclear speck. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOP (speckle type BTB/POZ protein).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016607 nuclear speck cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916186.2 True 2674 mRNA 0.50 11 8566771 8660121
XM_034309852.1 False 2524 mRNA 0.51 11 8566771 8650751

Neighbor

gene id symbol gene type direction distance location
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 317982 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 330149 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 356995 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 363418 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 411497 8130367 ~ 8155274 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 56203 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 69844 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 87588 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 104558 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 123278 8783399 ~ 8793415 (-)
G207895 NA non-coding downstream 32059 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 73730 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 134510 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 208697 8353710 ~ 8358074 (-)
G207650 NA non-coding downstream 365993 8176358 ~ 8200778 (-)
G208062 NA non-coding upstream 200442 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 211855 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 295321 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 295745 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 297140 8957261 ~ 8958211 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 276963 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 282179 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 299133 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 861279 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 1135659 7425717 ~ 7431112 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 47833 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 452845 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 536375 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 749683 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 804210 9464331 ~ 9474478 (-)

Expression


Co-expression Network