LOC113527984 (LOC108258094,LOC103035820,LOC108438916)


Basic Information

Item Value
gene id LOC113527984
gene name LOC108258094,LOC103035820,LOC108438916
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18062037 ~ 18063661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916194.2
CTATACAGATCAATCTCTGTGGCAAGACTCACAGCAAGACACGAAGGACGAAGAGAGACACTGAGCAAAGTCACTAAGAAAAGACAGACGGCTTAAAAGAGGAAAGCGGAAATATTCCAATTAAGATCTTTACTTCAGGTAAAGGAATTGAATCAGACATCAGCCAATATTAAGAAGGACAACATTTTTCAAGGACATTTAATTCATCATGGCTACACTCAACACTCGTTCTGTGACCACGCCTGTTGGCATTATACGGATGTTGGAGGTTGTGCTGTCATGTGTCATCTTCAGTCTGGTGGCCTCTGTGGGGCACAAGACCTCATCATACTGGACATGGTGCATGTTTACTTGGTGCTTCTGCTGCTTCATGACTCTTTTAATCCTTATCCTGGAGTTCACTAGTCTCCATGTAAAGGTGCCGATCTCCTGGGATGACTTCACTACTGCATTTGCTATGCTGGCTACACTAATGATATTGGCTGCCTCAGTCATCTACCCCACCTTCTTTGTTTATTCATCTGGTTCTCGCCAAATTGCTGCTACTGTCATTTCCTGCCTGTGTTTTATTGCATATGCAGTGGAGGTAGGCCTGACCCGGACAAGACCTGGTGAGATCAGTGGTTTCCTGTCTACAGTTCCAGGCCTGATGAAGGTTCTTGAAGCTTTTGTTGCCTGCATCATCTTCATCTCTCTCGACCCAGTCAAACACATTGCTTTGCAGTGGTGTGTGGCAGTTTATTCACTCTGTTTCATTTTTGCTATACTCATTATCATCCTCACAATCTGCAGGCTGCTGGATTTGTGCCCCTTTCCATTTGACAAAGTCCTTACTGGTTACAATGTACTTGCTGTTATGATGTACTTGACAGCAGTAGTTATATGGCCTCTTTACAGTttccaaaataatccaaaacCGGCAAACTGCAGTGCCTGTCCCTGGGACAAACTAGTGGTAGTGTCCTTTATGTCCTGTGTCAACCTCATTGTCTATATTGTGGACACATGCTACTCAATCCGCCTAGTATTCATCGCACCTGCTTAAGAGAAGACGAATGTTATGGTAACTTTGCAAGCATAATAAATAAGAGTGCAGTGAAATAATTACAGGATATAAAGATTCTGATTAGAGTAGCCAGCTGTTTGTGtgattgtttatttatgtaagaTTAAGGAATTAAGGAAATAGCTTACAAATTCCTATAATAACCTGGCAATCCAAATAGTAGGCACTTGTAGTCCAAATTAGCCCAAATTTCTCCTTTTGGGTAAactatatccatccatccatatatcaatctatcaatctatctatctagtccAGTAAAACTAATAAAAGCTACACTGgatctccttctttcttttatttttaaattataatgtttttctCACAGGAGCTAGtttggactgtttttttaaattatgattttACATTCTGGTGTGTTGTCTATCATTTGATAAATCACAAagatataattataaataaattacattttaatatgcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916194.2 True 1505 mRNA 0.39 2 18062037 18063661

Neighbor

gene id symbol gene type direction distance location
mfsd11 mfsd11,mfs11 coding upstream 18935 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 251547 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 294368 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 719962 17319742 ~ 17342075 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 976282 17067237 ~ 17085755 (+)
tac4 NA coding downstream 297120 18360781 ~ 18368589 (+)
LOC113528424 NA coding downstream 385625 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 408723 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 569837 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 729643 18793304 ~ 18801817 (+)
G212899 NA non-coding upstream 79231 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 163056 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 175755 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 235687 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 280109 17781712 ~ 17781928 (+)
G213191 NA non-coding downstream 453652 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 466698 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 642756 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 782555 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 895369 18959030 ~ 18960740 (+)
cenpx cenpx other upstream 329031 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 948881 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1915711 16140330 ~ 16146326 (+)
G211913 NA other upstream 2093278 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 3070587 14988086 ~ 14991450 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 120032 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 346180 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 361518 18425179 ~ 18434528 (+)
smim22 NA other downstream 851065 18914726 ~ 18919942 (+)
G213491 NA other downstream 1080413 19144074 ~ 19145240 (+)

Expression


Co-expression Network