pvalb8 (prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263)


Basic Information

Item Value
gene id pvalb8
gene name prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10403780 ~ 10407080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916204.2
GGGTCTGCCTGTAAGAATTCGATCCACAGACAGGTAACTTAAGAGTGGCCCATTGTCTCTGTGATCAGCCCTATATAAATCCCTCCTGCGCACAGGGTGCTCACCACACAGCCTTACCTCCACCTGCAGCATCCAGCACACTCCAACTTAACGGGACTATGTCGCTCACGTCCATCCTTTCCGCTGATGCCATCGACAGCGCTATCAAGGACTGCCAAGTACCAGAGTCCTTCAATCATAAGAAGTTCTTCCAGCTGTGTGGTCTCtccaaaaaaaatccccagGAAATAAGGACTGTCTTTGGCATTCTCGACAACGATGGCAGCGGCTTCATCGAGGAGGATGAGCTCAAATTCTTCCTGCAGAGGTTTTCATCTGGAGCTCGTGTGCTGACCGATAAAGAGACTAAGACCTTACTATCAGCAGCTGATGATGACGGTGATGGCAAGATTGGAGCTGAGGAATTCCAGGCCATGGTGCTCTCCTGAATGGTCAACCCTCCTCTTGTGTCATGGTTCATTTCAACAATGTTCTTCCTTGttattctgctttcttttaatttttggaAGCCCCTGATGATACAGACACAAAACAGACCACAGTTTATACTAGATTTGTAAATACCTGTAAAGAGATGAAATCCAAATCATCTCCCCAGTGTACGACTGACACAACATAAATAAttttgagtaaataaataaatgactaaactTTATGAA

Function

symbol description
pvalb8 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including adenohypophyseal placode; epidermal cell; hypophysis; integument; and sensory system. Orthologous to several human genes including OCM2 (oncomodulin 2).

NR:

description
PREDICTED: parvalbumin, thymic CPV3-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23925 OCM; oncomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916204.2 True 719 mRNA 0.45 5 10403780 10407080

Neighbor

gene id symbol gene type direction distance location
trnac-gca_22 NA coding downstream 18660 10385049 ~ 10385120 (-)
aimp2 aimp2,LOC106601790 coding downstream 19473 10381193 ~ 10384307 (-)
cacng4b cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710 coding downstream 30725 10360186 ~ 10373055 (-)
cacng1b cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235 coding downstream 48307 10345265 ~ 10355473 (-)
pitpnc1a LOC108274028,LOC108412868,LOC107691236,LOC107665814,LOC107752702,LOC106903613,LOC107743029 coding downstream 107657 10230636 ~ 10296123 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding upstream 5925 10413005 ~ 10414768 (-)
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding upstream 8821 10415901 ~ 10417915 (-)
pvalb5 LOC108278987,LOC108412247 coding upstream 12960 10420040 ~ 10427228 (-)
baiap2l1b LOC108276911,LOC108412765 coding upstream 78655 10485735 ~ 10527286 (-)
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding upstream 139241 10546321 ~ 10557800 (-)
G208951 NA non-coding downstream 61558 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 112895 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 216528 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 337424 10063977 ~ 10066356 (-)
G208613 msl1 non-coding downstream 486251 9914907 ~ 9917529 (-)
G208964 lmtk2 non-coding upstream 40656 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 111262 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 226455 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 681933 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 811579 11218659 ~ 11221378 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 671214 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 929302 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 984196 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1200140 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1260909 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 43644 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1235077 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1292769 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1890696 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1926774 12333854 ~ 12339269 (-)

Expression


Co-expression Network