pvalb5 (LOC108278987,LOC108412247)


Basic Information

Item Value
gene id pvalb5
gene name LOC108278987,LOC108412247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10420040 ~ 10427228 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916206.2
TAGCCAAACACTTTGGAAACCTTAATATGTAATTTTGATGAATCACAGGATGTCAAGTGTGGACTTCAGGTCCTCAATTTCTACATCAGTCAGCAAAACAGGGAATACAGACAAATCAAGCAGACATACATCTGCTGGAAATCAAATCACTAAATGATAATGAAGAAGTCTGCATGGCATGTTCATAGTTTCACGGTGGGTAACAAGGAGGACAGCTGCTTTCAAGAGACGCACTTATTCAGCATCAGAAGGAGGAAACAAGCATGGCATTTGCAGGAATATTGAAAGAAGAGGACATCGCTGCAGCAGTCCAGGCTTGCCAAGATCCAGGCACCTTCTCTCACAAGTCCTTCTTTGAACAAGTGGGGCTCCTTGGCAAATCAAACGTAgatggtcagaaggtgttcaaaGTCCTCGACCAAGACAAGAGTGGATTTATTGAGGAAGAGGAGCTCAAACTGTTTCTCCAGAACTTCATGGCAGGAGCCAGAGAGCTGACAGATGCTGAGACCAAAGCTTTCCTGGCTGCTGGAGATTGTGATGGAGATGGCAAAATTGGGATGCAAGaattctGTGTGCTGCTAAACTGAAACAATGATATAGCTACTGTACTGATGCTGAACACCTacaattttctttcttattcttaCTTATGAGAATCATAATTTTCAGTTGTTACAATTGGACTGAGagctgaattaaaaatatagtCTTTAATGACTGACctaatgaaatgtgaaaataaagtttagTACTTCACATTTTGTGTCTTGCATttcgttttttttcttgacaCACCAATGAAGACCTGTATTTTGGCTGTTAAATGGAACTAAGTTTTAATGAACAATAATTTGTCAAAattcacattatttaaaacagtaATTTGCTCTTTTTTATTCCCTATATGAGTGGATTATTAAGTTCTGATTGTTACAGTTATTAAA
>XM_034309978.1
TAGCCAAACACTTTGGAAACCTTAATATGTAATTTTGATGAATCACAGGATGTCAAGTGTGGACTTCAGGTCCTCAATTTCTACATCAGTCAGCAAAACAGGGAATACAGACAAATCAAGCAGACATACATCTGCTGGAAATCAAATCACTAAATGATAATGAAGAAGTCTGCATGGCATgcttgggaccagcactgagagtgcactgggTTGTGCAACCCCCATTGGCTCGGTTGGCTCCCTGCCCAGGAATTGAACGCAGGCCCTGGCGGTGAGAGTGCGGGAGACTCATccgctagaccaccagggaaccaccatatataaaagtgcagtaatccatgcaaattatatgatttgaagtggATCAAGTCGAGGTTTCTATTAGTTCATAGTTTCACGGTGGGTAACAAGGAGGACAGCTGCTTTCAAGAGACGCACTTATTCAGCATCAGAAGGAGGAAACAAGCATGGCATTTGCAGGAATATTGAAAGAAGAGGACATCGCTGCAGCAGTCCAGGCTTGCCAAGATCCAGGCACCTTCTCTCACAAGTCCTTCTTTGAACAAGTGGGGCTCCTTGGCAAATCAAACGTAgatggtcagaaggtgttcaaaGTCCTCGACCAAGACAAGAGTGGATTTATTGAGGAAGAGGAGCTCAAACTGTTTCTCCAGAACTTCATGGCAGGAGCCAGAGAGCTGACAGATGCTGAGACCAAAGCTTTCCTGGCTGCTGGAGATTGTGATGGAGATGGCAAAATTGGGATGCAAGaattctGTGTGCTGCTAAACTGAAACAATGATATAGCTACTGTACTGATGCTGAACACCTacaattttctttcttattcttaCTTATGAGAATCATAATTTTCAGTTGTTACAATTGGACTGAGagctgaattaaaaatatagtCTTTAATGACTGACctaatgaaatgtgaaaataaagtttagTACTTCACATTTTGTGTCTTGCATttcgttttttttcttgacaCACCAATGAAGACCTGTATTTTGGCTGTTAAATGGAACTAAGTTTTAATGAACAATAATTTGTCAAAattcacattatttaaaacagtaATTTGCTCTTTTTTATTCCCTATATGAGTGGATTATTAAGTTCTGATTGTTACAGTTATTAAA

Function

NR:

description
PREDICTED: parvalbumin beta-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916206.2 False 947 mRNA 0.38 6 10420040 10427228
XM_034309978.1 True 1151 mRNA 0.41 7 10420040 10427228

Neighbor

gene id symbol gene type direction distance location
LOC113527991 LOC108279005,LOC103031037,LOC108412819,LOC108273406,LOC107665844 coding downstream 2125 10415901 ~ 10417915 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding downstream 5272 10413005 ~ 10414768 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding downstream 12960 10403780 ~ 10407080 (-)
trnac-gca_22 NA coding downstream 34920 10385049 ~ 10385120 (-)
aimp2 aimp2,LOC106601790 coding downstream 35733 10381193 ~ 10384307 (-)
baiap2l1b LOC108276911,LOC108412765 coding upstream 58507 10485735 ~ 10527286 (-)
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding upstream 119093 10546321 ~ 10557800 (-)
srebf1 srebf1,LOC107691218 coding upstream 420473 10847701 ~ 10869084 (-)
LOC113527942 tom1l2 coding upstream 444806 10872034 ~ 10898540 (-)
tbl3 tbl3 coding upstream 516010 10943238 ~ 10962840 (-)
G208951 NA non-coding downstream 77818 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 129155 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 232788 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 353684 10063977 ~ 10066356 (-)
G208613 msl1 non-coding downstream 502511 9914907 ~ 9917529 (-)
G208964 lmtk2 non-coding upstream 20508 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 91114 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 206307 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 661785 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 791431 11218659 ~ 11221378 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 687474 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 945562 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1000456 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1216400 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1277169 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 23496 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1214929 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1272621 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1870548 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1906626 12333854 ~ 12339269 (-)

Expression


Co-expression Network