nptx1l (nptx1l,LOC108274797,LOC108435874,LOC107569544,LOC107665615,LOC107684232)


Basic Information

Item Value
gene id nptx1l
gene name nptx1l,LOC108274797,LOC108435874,LOC107569544,LOC107665615,LOC107684232
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14117953 ~ 14122314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916216.2
GCTCCATGGTGCTGAAATCAGCCGGCACCCTAGAAAACgccacacacacccataccaTGGAGGCCAGAGCTAGTGGAACCCACTGGAAACTTTTCGCACTTTATTGCTTGTTGGCTAATGCCTTTGGGCAAGATTTCGGTCCGACGCAGTTTATCTGTACATCCGTGCCCAAAGACGTGGACATTTGCACGGCCACGCTGCAGAACAGTGTGCCCGGTGAGGAGCTTAGAGCCACGGTCATGCAGCTCAGGGAGACGGTGCTCCAGCAGAAAGAAACCATCGTGAACCAGAAGGAGACCATCAGAGAGCTCACGGCTAAGCTGGCGCGCTGCGAGAGCCAGAGCGCTCCCGaggctggaggaggaggaggaggaggagggaggcgCAAGGAGTCGGGCTCCAAAAACACCATGGGGGATGTGTCGAGGGGTCCTAGTGAGACACTCGCCCAACTCTCGCAGACTTTGCAGAATCTAAAGCAAAGATTAGAAAACCTGGAGCAATTCAGCCGAAGTAACGGCTCAGCTCCGGCAAACAGcctaaaggatctgctgcagaGCAAAATCGACGACTTGGAGCGCCAGGTGCTGGCCCGCGTTAACGCCGTGGAGGAGGAGGGCAGACCGGCCGCGCGCAACGAGAGCGCGCAGCGCGGCCAAGTCGAGGCTACACTTACATCTCTGCACCAGCGCCTCAGCGACCTGGAGAAAGGTCAAAAGGAAGCCAGACCACTGGACAAATTCCAGTTGACGTTCCCCCTGAGGACCAATTACATGTAcgctaaagtgaaaaaaagcCTCCCAGAGATGTACGCCTTCACCGTGTGTATGTGGATTAAGTCTAATGCATCACCAGGAGTGGGAACGCCATTCTCATACGCTGTCCCTGGCCAGGCCAATGAGTTAGTTCTTATTGAGTGGGGAAACAACCCAATGGAGATTCTTGTTAATGACAAGGTTGCAAAGCTGCCTTTTCTCATTAATGATGGAAAATGGCATCACATCTGTGTTACGTGGACGACGCGTGATGGAGTGTGGGATGCCTTCCAAGATGGCGTGTTGAGAGGAAGCGGGGAGAATCTGGCACCATATCATCCAATTAAACCACAAGGCATGCTCATATTAGGACAAGAACAGgacaCTCTTGGTGGAGGATTTGATGCTACTCAGGCATTTGTGGGTGACATGGCCAATTTTAACATCTGGGACCGAAAACTAACTGTAGGAGAGATTTATAATTTGGCAACATGCAGCAGCAAAGCACAAGTGGGTAATGTCTTCTCCTGGCTGGAGACCAGCATTGAGATCTATGGTGGAGTATCCAAATGGACCTTCGAAGCTTGCCGccaactgaactgaactatGGGAATTATAAAGCTAACAAGATATCATCCAGTTCATCATCAGATATAATTTAAAAGCTATGGAGATGACCATGGCAACAAAACAAATATCATCTGGATTTTTTGTTAGTGTTTGAGAATTCTTGTGAACACTTGAgaagttttttttagtttatgaaAAGAAATACGTACCCACATCTATTTTGGATTTCGAAACCGAAGAGAAACTTGAAACGGTTTCTATTCTGACAACACTGCATTATTACCCAcattttttctaatcttctgCTGGGCAAATGATGCCTTATTGAACAGTTAGCCTGCTTGACACCCAATGGCAAAGGCATCTGATTCTGATCATATGAGTTATCATTAGTGCACAAAGCCAGGTAGATTTACATTAAATTTGTGATGTCATATTACCTACTTTTCCATACAAGAATAACACTGGCATTTTCACTGTGAACAGTAGGAGGatctaaaaaaaagaatgtaaaatcAAGAACAAAagtgaaatcatttttttccttgtgaGTTTTCATGTTGCGTGtgtatgcgagtgtgtgtgcatgtgcgtgaaAAGCCTTGGAGTTGCCAACATTTTACAAACCTGTGTGCCTTTGGGCTGTTGAAAAATCTTAAaggtcattatttaatatttgcattatttaatatttgcaagtatgtgtacatgtgtgtttatttccttGTGTAATTATTGATTCTGAAAGCTATATTGATTATTGTCATAACACTACAGTTGGCAGTCATTGCACATTTGAAGCAATTTGTCTAAAAGCACATGACCCATAGTGTGTTCGACACGTGTTTCTATTTTGTAAGGAATGTTCTTTACAGGAAAACAGCATGAAAGTCATAAATACTACAGCAGCATCAACAATCAAATCTGCTTTTCCTATTCTCTTTTTGGGTTCAGATTTTATACTGTATTGTTCTATGCTAAAAGCATGGCAGcactaaaatatgaaaaaaagatctaatgtttgtaataaaattgtGATACCTAAATCA

Function

symbol description
nptx1l Is expressed in adaxial cell; nervous system; neural tube; pharyngeal arch; and trigeminal placode. Orthologous to human NPTX1 (neuronal pentraxin 1).

NR:

description
PREDICTED: neuronal pentraxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916216.2 True 2374 mRNA 0.44 5 14117953 14122314

Neighbor

gene id symbol gene type direction distance location
cdr2l cdr2l,LOC107743016,LOC107665638 coding upstream 157602 13945365 ~ 13960351 (+)
si:ch211-120g10.1 si:ch211-120g10.1,si:ch73-364h19.2,LOC108279991,LOC108435881,LOC107558873,LOC107548722,LOC107748865,LOC107665693,LOC107654584 coding upstream 214842 13893471 ~ 13903111 (+)
si:ch73-364h19.1 LOC108258115 coding upstream 228626 13877160 ~ 13889327 (+)
dhps dhps,LOC107563249,LOC107661880 coding upstream 383737 13721234 ~ 13734216 (+)
fbxw9 fbxw9 coding upstream 404069 13702684 ~ 13713884 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding downstream 107508 14229822 ~ 14311551 (+)
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding downstream 252781 14375095 ~ 14376449 (+)
LOC113527900 LOC108275579 coding downstream 310410 14432724 ~ 14442332 (+)
im:6904045 NA coding downstream 321320 14443634 ~ 14447163 (+)
LOC113528183 LOC108275544 coding downstream 339042 14461356 ~ 14463482 (+)
G210784 NA non-coding upstream 128060 13987875 ~ 13989893 (+)
G210788 NA non-coding upstream 155567 13909109 ~ 13962386 (+)
LOC113528277 NA non-coding upstream 189964 13922873 ~ 13927989 (+)
G210792 NA non-coding upstream 246861 13870370 ~ 13871092 (+)
G210789 xylt2 non-coding upstream 255074 13862372 ~ 13862879 (+)
G211006 NA non-coding downstream 256229 14378543 ~ 14379897 (+)
G211031 NA non-coding downstream 310056 14432370 ~ 14433295 (+)
G211032 NA non-coding downstream 311513 14433827 ~ 14434055 (+)
G211058 NA non-coding downstream 344124 14466438 ~ 14466674 (+)
G211076 NA non-coding downstream 359499 14481813 ~ 14482016 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 624011 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 672267 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 1743581 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 1927883 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 1977582 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 496890 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 865772 14988086 ~ 14991450 (+)
G211913 NA other downstream 1795903 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 2018016 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2964970 17087284 ~ 17113156 (+)

Expression


Co-expression Network