hoxb13a (hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955)


Basic Information

Item Value
gene id hoxb13a
gene name hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9767867 ~ 9769918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916217.2
ATTGCGTCAATGCAGCTACGGCGATGAAACCGTGTGTCCTGCTCTGGAATAAGGTCTTTGCGCGATAATTCTCTGTCCGAATGGTACTCGTGCTATGACCACCTCCCTGCTCCTGAATCCTCGTTGGGCGGATACTGTAATGTTTGTGTATGAAAACAACTTGGATGAGCTTAACAAGAACATGGAAGGTCTGGTTGGTAGCAGCAATTTCGCGGCCAACCAGTGCAGGAATCTGATAGCTCACTCAGCTCTGAGCGGTCACCCTTCCAGCCTTGTGCATGGCTCCGGCTATTCCACGGTGGACGTGAGTACCTCGAGTTCAGGAGAAACGAGTAAGCAATGCACTCCGTGCGCAACGGTACCTCAAGCTTCGTCCACGGGGCCTATACCTTATGGCTACTTTGGCAACAGTTATTATCCCTGCAGGATGGGGCGGGGTTCGCTCAAGACTTGCACGCAACCGAGCGCACTTGGCTACTCTGCAGAGAAATACATGGACACCCCGGTCACATCTGAAGAATATCCCACCAGGGCCAAAGAGTTTGCCTTTTACCACGGCTACCATGGTCCGTATCAGTCCATGGCCAGCTACTTGGACGTGTCCGTGGTACAGACACTAGGGACCAGCGAGCCAAGGCACGATAGTCTTCTCCCTATGGACAGTTATCAACCATGGGCTCTAGCTAATGGATGGGGAGGTCAAATGTACTGTTCCAAGGACCAGAGCCAAGCTGGCCATCTGTGGAAATCTGCATTAGCAGATGTTGTTGCCCACCAACATGACGGGGGCTCTTTTCGCCGAGGTAGAAAGAAAAGGATACCGTACACCAAAGTGCAGCTAAAGGAACTGGAGAAAGAATATGCAGCCAACAAATTCATCACGAAAGACAAGAGGAGAAAGATTTCTGCGGTAACCAACTTGTCCGAGAGGCAGATCACAATCTGGTTTCAGAACAGGAGggtaaaggaaaagaaatttgTTGCCAAAGTTAAGACCAGCGCTCCATAATGGGGATTTGAgcaacaagacatttttttttatctgtgactcagattaaagaaaaaagtcgACTTGACTTTTACTGGGATTGTGTGCTCTCTTGCCTGCGTATTTGCATCGCGAACTAATAAAAGGATGAACTAGGATAGGAcaacataaagaataaaaaagactaTATCCCTGTAAAAATGCCTGCCAAAATATGCCTCTGTGGGATTTTACATACAAGCTAAATGTTAGAATATTAGGCATGTCGATGTTGTTACTGCAGTAGAAATGTAGCTTATTAAACTATATACTCATTAATATTCTTTATAACATACTTATATGacatatattaaatgtatatgtatatatacaattaAAAATCACGTTAATCTTCAAAGTAATTTACAGCCTTAGCTAATTTTCATAATTAACTCATTTGTAAGTTGTGCTAGTGGATACGCCAAGTGTTGTCCCGTAAACGTCCCATTTACGTTCATGTTCATTTCAAACAAATCACAGTCTTGCTGGGGTGCTTAAACAGTCCTGTCAAGTTGTCAACCTGCAACGAGTTTGTGAgcacttctgtgtttttttttttcatcatttttttgaCAATCCTAGACACGGGACTTTCTTTTCTCTATGATACACCATATTGTAAATATGATACAACATATTTACAATTGATTTGGaccaaacatttaaaataaaaatttgtgtAAACGTATCATGCTTTGCAATgcgtaaataaaaaaaagataagaacTGA

Function

symbol description
hoxb13a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ductal carcinoma in situ and renal cell carcinoma. Orthologous to human HOXB13 (homeobox B13).
hoxb13 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; methyl-CpG binding activity; and sequence-specific double-stranded DNA binding activity. Involved in angiogenesis and negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. Implicated in ductal carcinoma in situ and renal cell carcinoma. Biomarker of cervical cancer; endometrial cancer; and prostate cancer.

NR:

description
PREDICTED: homeobox protein Hox-B13a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916217.2 True 1757 mRNA 0.43 2 9767867 9769918

Neighbor

gene id symbol gene type direction distance location
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding downstream 26534 9737003 ~ 9741333 (-)
hoxb7a hoxb7 coding downstream 39013 9724361 ~ 9728854 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding downstream 45230 9675762 ~ 9722637 (-)
nr1d1 nr1d1 coding upstream 126948 9896866 ~ 9904394 (-)
ppp1r9ba ppp1r9b,LOC108412948 coding upstream 218198 9988116 ~ 10033085 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding upstream 272263 10042181 ~ 10061921 (-)
nags nags coding upstream 352468 10122386 ~ 10134023 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 376930 10146848 ~ 10185101 (-)
G208473 NA non-coding downstream 19828 9746496 ~ 9748039 (-)
G208391 NA non-coding downstream 262117 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 321763 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 664741 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 704360 9061580 ~ 9063507 (-)
LOC117599011 NA non-coding upstream 59709 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 67332 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 144989 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 294059 10063977 ~ 10066356 (-)
G208758 NA non-coding upstream 417118 10187036 ~ 10187252 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 35301 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 293389 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 348283 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 564227 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 624996 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 680806 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1872239 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1929931 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2527858 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2563936 12333854 ~ 12339269 (-)

Expression


Co-expression Network