wipi1 (wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112)


Basic Information

Item Value
gene id wipi1
gene name wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3694729 ~ 3714082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916237.2
CCCCGCCTACCATGATGTGACGCTAACTGCCGTGACGCAAGAGCCAtcagctgtttttgttttgctcctGTTTGGGTCATTACGGATCTTCGGCAGTGTGAGGCGGCTCCAGCGGATCCGGGGGCTCCGGTGAAGGCGGGGCCGGGCGGAGGTCGCCGGAGTTCGGCATGGAGAGCGGAGATGGAGGCGGAGGAGCCCGCGGCCCGGCACTGCGCTGCGCCTCCTTCAACCAGGACTCCACgTCGCTGGCTGTGGGTACTAAGGAAGGTTACAGACTGTTCTCCGTCACCGCCGTGGATAAACTGGAGTGTATTCATGAAAGCACAGAGAATCCGGACGTCTACATCGTGGAACGTTTGTTCTCCAGCagcctggtggtggtggtgagcCACTCGATGCCACGACGCATGAACGTCTATCATTTCAAGAAAGGAACGGAAATCTGCAACTACAGCTACTCCAACTCCATCCTCGCCGTGCGCCTCAACCGACAGAGGCTGGTGGTTTGTCTGGAAGAGTCCATTTACATCCACAACATAAAGGACATGAAGCTTCTGAAGACTCTTCTGAACACACCCCCCAACCCCTCAGGTCTCTGTGCTCTCTCCATCAACCATTCCAACTCTTACCTGGCATATCCCGGCAGCGCCACCATCGGAGAAATCATCGTCTACGACGCCAACAATCTGagcacagtgACCGTGATTCCTGCCCACGACAGTCAATTAGCCGCCATCACCTTCAACGCCTCAGGCACCAAACTGGCCAGCGCCTCAGAGAGgGGCACAGTGATCCGAGTGTTCTCCATTCCAGAGGGACAGAGACTGTTTGAGTTCCGCAGAGGAATGAAAAGatACGTGAACATCAGCTCCCTGTCCTTCAGTCCTGATGCTCAGTTCCTGTGTGCCTCGAGCAATACTGAGACAGTTCACATCTTCAAACTAGAGCAGCATGGACACAGcgggGAGGAGGAGAACCCCTCGTGGTCAGCGTACGTGGGGAAGATGTTTTCGGCGGCGAGCAGCTACCTGCCCGCACAGGTTTCAGGAATGATGAGTCAGGATCGAGCGTTCGCCACGGTCCGCCTCAACACACACGgccacaaacacacctgcacTTTAACAATAATCCAGAAGCTTCCGCGGCTCCTCGTAGCCTCATCTGAAGGGCAGctctttatttataacattgaCCCCCAGGACGGGGGCGAGTGCAcgctggtacacacacacagGCTGTTAGGATCGGAAGAGGAGGCTGAGGTGTCTGAGGGATCGGCGGCTCCTTCCTACGCTGCGACCGCGGCCATTGGCACCTGTGGACCCGTCTCTGCCACACTaactgGATATTCCGAGGACGGAGGAGTGATGAAAGGCGAGGTGATTCCCGAGCACGAGTTCGCCGCCGGTCCCGTGTGTCTGGACGACGAGACCGAGTTCCCTCCAATAAATCGGTGTCTTGGCGGATCCCGTCGTGGCAGAACCGGCCGTCCGTGAGAGCCTTCAAGCCGGAGCGGAACGACCCTCAGTACACGAGCCGGGACTAATTAACGCGTTTCAGGAATAATTAACCCAGTTCCGGACTAATCCAACTCATTTCAGGGTGCTAACCTCACGAGCAGAAAAAGCATCAGGAGGGCGTGGTCGTTGTTGCTCGCTCTCCTGAAGGGTGTGTTATATGCATGAACAAACCGTAACCACGGACACGACACACATTTCTTGAAGATGTAAAACTGTAGCAtcgtattatattatattatattataatgataTTGTTTTATTCGTTTATGTTTAACATCGTCATATTTACAGAtggaatttgtttttttgttgtttttaacgTATTTGCTGTATTAATACCTAATCCATGTTTACACGTCATCATCCTGAACACTAATACAACAGGATGTGCTTTTAAATGTACGTGCctatgattttatttgtatttcgCAGAATTGCTGgaagaccaaaaaaaataaataaataaaaattaaaaagaaactgTAGAAAATAGGAATAAAATTATGCAAAGCA
>XM_034309825.1
CCCCGCCTACCATGATGTGACGCTAACTGCCGTGACGCAAGAGCCAtcagctgtttttgttttgctcctGTTTGGGTCATTACGGATCTTCGGCAGTGTGAGGCGGCTCCAGCGGATCCGGGGGCTCCGGTGAAGGCGGGGCCGGGCGGAGGTCGCCGGAGTTCGGCATGGAGAGCGGAGATGGAGGCGGAGGAGCCCGCGGCCCGGCACTGCGCTGCGCCTCCTTCAACCAGGACTCCACgTCGCTGGCTGTGGGTACTAAGGAAGGTTACAGACTGTTCTCCGTCACCGCCGTGGATAAACTGGAGTGTATTCATGAAAGCAAGAATCCGGACGTCTACATCGTGGAACGTTTGTTCTCCAGCagcctggtggtggtggtgagcCACTCGATGCCACGACGCATGAACGTCTATCATTTCAAGAAAGGAACGGAAATCTGCAACTACAGCTACTCCAACTCCATCCTCGCCGTGCGCCTCAACCGACAGAGGCTGGTGGTTTGTCTGGAAGAGTCCATTTACATCCACAACATAAAGGACATGAAGCTTCTGAAGACTCTTCTGAACACACCCCCCAACCCCTCAGGTCTCTGTGCTCTCTCCATCAACCATTCCAACTCTTACCTGGCATATCCCGGCAGCGCCACCATCGGAGAAATCATCGTCTACGACGCCAACAATCTGagcacagtgACCGTGATTCCTGCCCACGACAGTCAATTAGCCGCCATCACCTTCAACGCCTCAGGCACCAAACTGGCCAGCGCCTCAGAGAGgGGCACAGTGATCCGAGTGTTCTCCATTCCAGAGGGACAGAGACTGTTTGAGTTCCGCAGAGGAATGAAAAGatACGTGAACATCAGCTCCCTGTCCTTCAGTCCTGATGCTCAGTTCCTGTGTGCCTCGAGCAATACTGAGACAGTTCACATCTTCAAACTAGAGCAGCATGGACACAGcgggGAGGAGGAGAACCCCTCGTGGTCAGCGTACGTGGGGAAGATGTTTTCGGCGGCGAGCAGCTACCTGCCCGCACAGGTTTCAGGAATGATGAGTCAGGATCGAGCGTTCGCCACGGTCCGCCTCAACACACACGgccacaaacacacctgcacTTTAACAATAATCCAGAAGCTTCCGCGGCTCCTCGTAGCCTCATCTGAAGGGCAGctctttatttataacattgaCCCCCAGGACGGGGGCGAGTGCAcgctggtacacacacacagGCTGTTAGGATCGGAAGAGGAGGCTGAGGTGTCTGAGGGATCGGCGGCTCCTTCCTACGCTGCGACCGCGGCCATTGGCACCTGTGGACCCGTCTCTGCCACACTaactgGATATTCCGAGGACGGAGGAGTGATGAAAGGCGAGGTGATTCCCGAGCACGAGTTCGCCGCCGGTCCCGTGTGTCTGGACGACGAGACCGAGTTCCCTCCAATAAATCGGTGTCTTGGCGGATCCCGTCGTGGCAGAACCGGCCGTCCGTGAGAGCCTTCAAGCCGGAGCGGAACGACCCTCAGTACACGAGCCGGGACTAATTAACGCGTTTCAGGAATAATTAACCCAGTTCCGGACTAATCCAACTCATTTCAGGGTGCTAACCTCACGAGCAGAAAAAGCATCAGGAGGGCGTGGTCGTTGTTGCTCGCTCTCCTGAAGGGTGTGTTATATGCATGAACAAACCGTAACCACGGACACGACACACATTTCTTGAAGATGTAAAACTGTAGCAtcgtattatattatattatattataatgataTTGTTTTATTCGTTTATGTTTAACATCGTCATATTTACAGAtggaatttgtttttttgttgtttttaacgTATTTGCTGTATTAATACCTAATCCATGTTTACACGTCATCATCCTGAACACTAATACAACAGGATGTGCTTTTAAATGTACGTGCctatgattttatttgtatttcgCAGAATTGCTGgaagaccaaaaaaaataaataaataaaaattaaaaagaaactgTAGAAAATAGGAATAAAATTATGCAAAGCA

Function

symbol description
wipi1 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Is expressed in central nervous system; notochord; and periderm. Orthologous to human WIPI1 (WD repeat domain, phosphoinositide interacting 1).

NR:

description
PREDICTED: WD repeat domain phosphoinositide-interacting protein 1-like isoform X1

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:0050681 androgen receptor binding molecular_function
GO:0030331 estrogen receptor binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916237.2 True 2033 mRNA 0.52 14 3694729 3714082
XM_034309825.1 False 2030 mRNA 0.52 14 3694729 3714082

Neighbor

gene id symbol gene type direction distance location
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding upstream 2362 3685478 ~ 3692367 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 54858 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 134051 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 194301 3485744 ~ 3500428 (+)
si:dkeyp-72e1.6 LOC108274424 coding upstream 210981 3480238 ~ 3483748 (+)
slc16a6b LOC108259325 coding downstream 9681 3723763 ~ 3733885 (+)
LOC113528497 NA coding downstream 23378 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 33419 3747501 ~ 3756184 (+)
rnf113a rnf113a,LOC107693494 coding downstream 196123 3910205 ~ 3916855 (+)
ddx42 ddx42,LOC102777021 coding downstream 221314 3935396 ~ 3947545 (+)
G204774 NA non-coding upstream 45191 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 48054 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 104698 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 291382 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 337823 3353298 ~ 3356906 (+)
G204815 NA non-coding downstream 62522 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 139414 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 141972 3856054 ~ 3868097 (+)
G204860 NA non-coding downstream 150831 3864913 ~ 3869743 (+)
G204912 NA non-coding downstream 391861 4105943 ~ 4107728 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 33565 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 494596 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 681870 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 786686 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1508565 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 252651 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 257097 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 906136 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 978395 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 998791 4712873 ~ 4721468 (+)

Expression


Co-expression Network