zgc:86896 (LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493)


Basic Information

Item Value
gene id zgc:86896
gene name LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3685478 ~ 3692367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916239.2
ccagAGCCTCAGTGTTCGGCTGCATTCGTGTCGACTGCCCAGAGTCCACGGAGCCTCACGCCTGACCTCAGGACTGAATATACCGACTCAGAGAAAGAGCTCCTCTGTTACAACATGTCTGTGTACAGCTTTGGGTTGGAGCCTCTGTCCTGTCACGCCTGGAATAAAGACCGAACTCAGATCGCCATCAGCCCCAACAGCAGTGTGGTGAACATTTACCAGAAGAAGGGGAAGGAATGGAGCAAAATCCATGAGCTGAAGGAGCACAGCGGGCGAATCACGgGAATCGACTGGGCCCCAGAGTCGAACCGTATCGTGACGTGTGCCTCAGACAGAAACGCCTACGTGTGGACTCTGAAGGACGGCGTGTGGAAGCCAACTCTCGTCCTCGTTCGCATCAACAGAGCCGCCACGTGTGTCAAGTGGTCACCTCTGGAGAACAAGTTTGCTCTTGGAAGTGGAGCTAAACTCATCTCAGTGTGTTACTTTGAGAAAGAGAACGATTgGTGGCTCAGTAAGCACATAAAGAAAGGGATCTGCTCGACCGTGCTCAGTCTGGACTGGCATCCCAATAACATCCTGCTGGCAGCCGGGTCATCCGATCTCCACTGCAGGGTTTTCTCCACGTATATCAAGGAAATTGAGGACAAGCCTGGTCCGACACCATGGGGAGTCAAGATGCCGTTTGGTGAAATGCTTCTGGAGAATAAAGACTGTGGTGGATGGGTGCACAGCGTCGCCTTCTCTCCGTCTGGAGACACGCTGGCCTGGGTCAGCCACAACAGCTCCATCAGCGTCGCCGATGCCACGCAGGGCAAAGAGGTTACACAGCTGACTACAGAACATCTTCCTCTGCTCAGTGTGCTGTACATCAGCGAGACAGAGATTGTGGCCGCGGGCCATGACTGCTGTCCCTACCACTTCTCCTACAAGGGGCCCGGCAAGCTGGAATTTGTGCGAAAGCTCGGACTCGCCAAGCAGACGTCAAAAAACAGCATGTCGGCCATGCAGCACTTCCGCAACCTGGACAAAAAGGCCACGACCGACGAGGAGGATAACGAGCTGAGCACTCTACACCAGAACAGCATCACCCAGCTGTGTGTGGTGGAGGGAGACAGGGCCAAAGTGGAAAAGTTCAGTAGTGTCAGTCTGGATGGAGCCATGGTGCTCTGGGAATTCAAGcCTTGAAACTCACTAATAAGGCAGAAAGGTTTTGCGGCCGATCCGACATCCACGCCACACCACGTCACACCACTCCAAAGACCTCAGTGTCATTCTGCTGCTGTGCTTAGAAATATCATTTAAGATCaacactttattttctttagcttttacaaaataaacatgttatactgtaattttaatttctgtaaTTACTCAGACAAAAGGTATTACTCTAGAGTAACTATTACAGGGACACAGACTTTAGTTTCCAAgttttcaaatgattttttaaaaatatattttggttttaggatttttttttttaagaaagtttTCCTGTCATAGCaaataaaaattttcatttgtaaaaa

Function

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916239.2 True 1535 mRNA 0.49 10 3685478 3692367

Neighbor

gene id symbol gene type direction distance location
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 45607 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 124800 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 185050 3485744 ~ 3500428 (+)
si:dkeyp-72e1.6 LOC108274424 coding upstream 201730 3480238 ~ 3483748 (+)
mpv17l LOC108256073 coding upstream 208153 3470453 ~ 3477325 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding downstream 2362 3694729 ~ 3714082 (+)
slc16a6b LOC108259325 coding downstream 31396 3723763 ~ 3733885 (+)
LOC113528497 NA coding downstream 45093 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 55134 3747501 ~ 3756184 (+)
rnf113a rnf113a,LOC107693494 coding downstream 217838 3910205 ~ 3916855 (+)
G204774 NA non-coding upstream 35940 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 38803 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 95447 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 282131 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 328572 3353298 ~ 3356906 (+)
G204815 NA non-coding downstream 84237 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 161129 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 163687 3856054 ~ 3868097 (+)
G204860 NA non-coding downstream 172546 3864913 ~ 3869743 (+)
G204912 NA non-coding downstream 413576 4105943 ~ 4107728 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 24314 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 485345 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 672619 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 777435 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1499314 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 274366 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 278812 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 927851 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1000110 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 1020506 4712873 ~ 4721468 (+)

Expression


Co-expression Network