LOC113528022 (rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663)


Basic Information

Item Value
gene id LOC113528022
gene name rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16225651 ~ 16227442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916252.2
GCCCCGGCTCCAGGGGCTCAGCACAGAGAAACCTGACCCGCGTGTAGACTTGTTTCAACCCTTCCTGAGGACTAACTGAGCGTCCGCTTGCGTTTGAGCACCTGCAGAAGTCATGATTAAGAAAATGTCTCCGTCCGAGCATGACTTCGACATCCCAGCTAAGAACTGCCATCGCATGGTCGTGCTCGGATCCACCAAAGTGGGCAAGACGGCGATCATCTCTCGCTTCCTGAACGAGCGCTTTGATGATCAGTACACGCCGACCATCGAGGACTTCCACCGCAAGTTCTACAGCATCCGCGGAGACGTCTATCAGCTGGACATCCTGGACACGTCCGGAAACCACCCGTTCCCTGCCATGAGGAGGCTCTCCATCCTGACAGGTGATGTTTTCATCCTGGTGTTCAGCTTGGACAATCGAGCCTCTTTCCAGGAGGTGCAGCGACTCAAGAGGCAAATCTTTGAGACCAAGTCATGTCTAAAGACCAAGACGAAGGAGAGCGCAGATGTGCCACTGGTCATCTGTGGCAACAAGTGCGATCGTGAGTTCACTCGTGAGGTTTCAGACGACGAGATCGAGCGACTGGTGGCGGGGGACGAGCGCTGTGCCTACTTCGAGGTATCGGCCAAGCGCAACACCAACGTGGACATCATGTTTCACGCGCTCTTCACCATGGCCAAACTGCCCGACGAGATGAGCCCGGACCGGCACCGCAAGATCTCACTGCAATGTGGTGATGTGCTGCACAGAAAATCCCTGCGCAATCGTAAGTTCAAGGACGGCGGAGACGCGTACGGCATCGTGGCTCCCTTCGCAAGGCGGCCGAGTGTGCACAGCGATCTCATGTACATTAAGGAGAAAGCCTTACATCAAGGCACCAAGGATCGCTGTGTCATTTGCTAAACAGACTAATCGGACTCTGAATGTGAACACTCCAGAGGGGCACAACAGTACTAAAGGTCACGGTGACACCAGCACTTTGGGTTCTATCCCGCGATTCGTGAGACCCGTGCTTTCCGGGTTTGATcatgtggtggtggtggtggtgcgaGCAAACAAGTTGGAGATTCTTCAACAAACCTGCTACAAGCATTTCGCCGAAAAGACTCTCCCGACCGACTAGTTCGCTGTGAAACTTGAGCACTTGTTTACAGTTTgctagaatattttatttaaaaaaaagaacgcAATGAACTTGAATGTCTGTGGCATTGTGAACAAAATACATGAATGTATATTTATTCTTCTATGTCAGCGTTTACTTTTGttacaaaaaggaaaaataaaagatgaatcaaatgtaaaaa

Function

symbol description
rasd1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to several human genes including RASD1 (ras related dexamethasone induced 1).

GO: NA

KEGG:

id description
K07843 RASD1; RAS, dexamethasone-induced Ras-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916252.2 True 1308 mRNA 0.51 2 16225651 16227442

Neighbor

gene id symbol gene type direction distance location
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding downstream 608267 15607444 ~ 15617384 (-)
LOC113528397 stk31 coding downstream 630447 15582604 ~ 15595204 (-)
LOC113528505 LOC108277132 coding downstream 644586 15578454 ~ 15581065 (-)
LOC113528654 NA coding downstream 753739 15471777 ~ 15471912 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding downstream 1022467 15053544 ~ 15203184 (-)
sox8a sox8 coding upstream 99443 16326885 ~ 16330539 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding upstream 273679 16501121 ~ 16537254 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding upstream 310939 16538381 ~ 16545640 (-)
LOC113528041 LOC108276772 coding upstream 387649 16615091 ~ 16634737 (-)
LOC117595684 NA coding upstream 443703 16671145 ~ 16688599 (-)
G212018 NA non-coding downstream 185252 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 188334 16037116 ~ 16037317 (-)
G211935 NA non-coding downstream 256876 15892024 ~ 15968775 (-)
G212006 NA non-coding downstream 283142 15940586 ~ 15942509 (-)
G211810 rnf213 non-coding downstream 588660 15635735 ~ 15636991 (-)
LOC113528275 NA non-coding upstream 226118 16453560 ~ 16455847 (-)
G212319 NA non-coding upstream 251449 16478891 ~ 16497232 (-)
G212395 NA non-coding upstream 453742 16681184 ~ 16690337 (-)
G212463 NA non-coding upstream 604526 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 951086 17178528 ~ 17179748 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 21660 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1239539 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1535519 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 1704676 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 2196010 14017615 ~ 14029641 (-)
LOC113528039 LOC108276772 other upstream 345103 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 533790 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 1065331 17292773 ~ 17319719 (-)
G212700 NA other upstream 1158769 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 1162744 17390186 ~ 17518527 (-)

Expression


Co-expression Network