trap1 (trap1)


Basic Information

Item Value
gene id trap1
gene name trap1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17319742 ~ 17342075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916268.2
TCAGTAAGCGCCACGAGAAGGTCCTTCTTTCACGTCGCTTGTCCAACACGCCGCTTCTTGGAGTAATAGGTCAAATCGCAACACAGGAGAGATGTCCCGGTGTTTGACACTACTCAGGTTTGGTCTGCACAGTTGTGGAAAGGCTAGCCTTTTCTCGTGCAGCCGAAGCCGGAGTGTCACAGCAGCATTCAGCGGAGTCAATACAAGAACAAGGACGAAACAGTATAGCACTAAACCTAGACTCTGGAGCCCAAGCCATTTTGGTGTGAAGTTAACCTGCCGTTCCTATAGCACTCAAACAGAAACTGCTGAAGAGGAGATTCTCCACAGCATTATTAGTGACACAGAGAATGTTCAAGgatcCTACTCCAAGCATGAGTTCCAGGCAGAAACAAAGAAGTTGCTGGACATTGTGGCCAGATCTTTGTACTCAGAGAAAGAGGTGTTCATAAGGGAGCTCATCTCGAATGGTAGTGATGCGCTAGAGAAGTTGCGACATAAGCTTATTACAGCAGGAGGAGATTCTGAACCTCTGGAAATCCATCTTCAGACTGATGCAGCTAGAGGCATTCTAACTATTCAGgACACTGGGATTGGGATGAGTCAAGGGGAACTGATTACCAACCTTGGCACCATTGCTTGCTCTGGCTCCAAGGCCTTTCTGGAGGCTCTTCAGAGCCAAGCCGAGGCCAAAAGCTCCATCATCGGGCAATTTGGTGTCGGCTTTTACTCTGCCTTTATGGTGGCGGACAAAGTAGACGTTTACTCTCAGAGTGCAGAGCCTGGTGTTCCCGGATACAAGTGGTCCTCAGACGGCTCAGGAGTGTTCCAGATTGCTGAGGCCAGTGGGGTGAGACAGGGCACTAAAATTGTCTTGCACCTGAAGAATGAATGCAAGGAGTTTTCTTCTGAGGACTGTGTTAAAGAGGTTGTGAAGAAGTACAGCAACTTTGTCAGTTTCCCCATTTACCTGAATGGCCGACGACTGAACACACTGCAGGCTCTCTGGATGATGGACCCCAAAGAGATCAGTGAGTGGCAGCATGAGGAGTTTTATCGCTATGTAGCTAAGGCGTATGATAAACCtcgctacacactgcactaccgTGCTGATGCTCCCCTCAACATACGCAGCATTTTCTATGTTCCTGAGATGAAGCCAACCATGTTTGACGTGAGCAGGGAGATGGGCTCCAGAGTGGCTCTGTACAGCCGGAAAGTCCTGATCCAGACCAAGGCTACAGACATTTTGCCCAAGTGGCTGCGCTTCTTGCAAGGAGTGGTGGACAGTGAGGACATCCCCTTGAATCTCAGCAGAGAGTTACTACAGGAGAGTGCTCTCATCAGGAAATTGCGGGATGTGCTGCAGCAGCGAATCATTCGTTTCCTGTTGGACCAGAGCAAGAAAGAGCCGGAGAAATATGCTCACTTCTTTGAGGACTATGGGCTTTTTATGAGAGAAGGCATTGTCACCAGCACTGAGCAGGGTATTAAGGAGGACATAGCCAAGCTGCTCCGCTTTGAGTCCTCAGCATTGCCTGCTGGGCAGCAAACCAGCCTCATGGACTATGCCTCGCGCATGAAGGCAGGCACCAGGAACATCTACTACTTGTGTGCTCCCAGTCGCCATCTGGCTGAACACTCTCCGTACTATGAGGCCATGAAAATGAAGGACATGGAGGTGCTCTTCTGTTATGAGCAGTTTGATGAGCTAACCCTGCTCCACCTCCGAGAGTTCGACAAGAAGCAGCTGATCTCTGTCGAAACCGACATTGTAGTTGACCACTACAAGGAAGAAAAGTTTGAAGCCAACAAGCCAGCATCAGAACAATTAAGTGAGCAGCATGCTGAGGATCTAATGGCCTGGATGAGGAACTGTCTTGGTCAGAAAGTCACAAATGTCAAGGTGACTCCTCGTCTGAACACTCACCCTGCCATGATCACAGTGCTGGAGATGGGAGCAGTGCGACATTTCCTTCGCACTCAGCAGCTGGCACGTAGTGTGGAGGAGAGGGCACAGATCCTGCAGCCCACACTGGAGATCAACGCTGGGCATGACCTCATCAAGAAGCTTCATGTGCTGAAAGACTCTAATCCAGATCTTGCCCAGCTGCTTCTTGAGCAGATTTTTGACAATGCTATGATCACAGCTGGTCTGAATGATGACCCTCGGCCAATGATCTCTCGCTTAAATGATCTGCTGACCAAAGCCCTGGAGAAACACTGAGACCAGGACTGGAGATTGGAGAGACCTGTCCTGAGGAATACTTTGTTTTGCATCATCACAACACTATAAATGTATTGAATTTTCTATCATAGTTTGTCCTACACTTTGCTATGCTAAATCCCCATAAATGTCACCGGTCTTTGTTCAGATTAACAGCTACTCATCTAAGAgtagtgttatttttttcatggcTCAGAGTCAGATGTTTGTTATGGAAGAATGTTCAGTGTAGTTCGGTGTAATATTGATGTGTGTAGTATTAAAGGACAAAGATGATGAGAGGACTCTTACTGCACATATCCACTTGCAAATTTTGTTGCCAAAGCACTTTTTCTTCCAGCTTATGGGCATTTCTATGCCATTTCTTTTGCTTGCCTCCATGCACCAGGCACATTGATTTGTATAATGTTTGGCTCTGCTGAACTTTTGCTGCCGCACAGTAAAACAGATTTTGCAAGTCATGCAAAACGTGGATTCAGCAGAACTGTCCACTGAAATGAATGCATAGTGGTTGCTTGTGGGAACACAGTATTTAAACCTGCAACATCAGATTCTGTTGAACTCTTGCCtttattattgatattgttCTTTTGTCCTTACTTGTTTATTCATCAGCAGAATTGTAATAGccattgtttttatgtttaaagttCAAATCTCAGTTGCTTATGATACTCGCAAGACATTTGTGACTGTTTAGAAGACGAAGAAGCAGTAAAACCTGGAgttccaaaacacacaaaaatataggGAAGGAATGGATTCACCATAAGCAATTGTATGAATGggatgaaaaaaattgaaaaatctaTTTACAAAAAAGTAAACTAAGGACAAATAGTTATTATATACAATAACACTGCAGGGGcaagctcatttaaaaaaactgttggTATTATTTTAACTGATAATGTTCTTTTGGAATGATCACATTTTGTGCAATTGTTCCACATTTGCATATTTCcaaataaattgaatattaattgtgtttctataaa

Function

symbol description
trap1 Enables ATP hydrolysis activity; identical protein binding activity; and metal ion binding activity. Involved in nucleic acid phosphodiester bond hydrolysis. Predicted to be active in mitochondrial inner membrane. Orthologous to human TRAP1 (TNF receptor associated protein 1).

NR:

description
PREDICTED: heat shock protein 75 kDa, mitochondrial

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09488 TRAP1, HSP75; TNF receptor-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916268.2 True 3225 mRNA 0.45 18 17319742 17342075

Neighbor

gene id symbol gene type direction distance location
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding upstream 233987 17067237 ~ 17085755 (+)
LOC117595691 NA coding upstream 321048 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 322090 16995855 ~ 16997652 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 347975 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 500474 16808875 ~ 16819268 (+)
ccdc137 NA coding downstream 407099 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 466197 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 679010 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 719962 18062037 ~ 18063661 (+)
tac4 NA coding downstream 1018706 18360781 ~ 18368589 (+)
G212589 NA non-coding upstream 22868 17296408 ~ 17296874 (+)
LOC117598773 NA non-coding upstream 33900 17276654 ~ 17285842 (+)
G212582 NA non-coding upstream 35256 17284283 ~ 17284486 (+)
G212571 NA non-coding upstream 139489 17179794 ~ 17180253 (+)
G212541 NA non-coding upstream 263935 17052378 ~ 17055807 (+)
G212662 NA non-coding downstream 42889 17384964 ~ 17385177 (+)
G212728 NA non-coding downstream 319880 17661955 ~ 17662194 (+)
G212729 NA non-coding downstream 321660 17663735 ~ 17663960 (+)
G212722 NA non-coding downstream 350016 17692091 ~ 17694083 (+)
G212723 NA non-coding downstream 391055 17733130 ~ 17734044 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 206586 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 1173416 16140330 ~ 16146326 (+)
G211913 NA other upstream 1350983 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2328292 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2697954 14619204 ~ 14621788 (+)
cenpx cenpx other downstream 356598 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 841618 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1067766 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1083104 18425179 ~ 18434528 (+)
smim22 NA other downstream 1572651 18914726 ~ 18919942 (+)

Expression


Co-expression Network