helz (helz,LOC107691233,LOC107665819)


Basic Information

Item Value
gene id helz
gene name helz,LOC107691233,LOC107665819
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10298887 ~ 10341715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916301.2
TGTGTCAGTGTGGTATAAAGCTACATGACGGTAGCATTTCCAGGAAGCCGCGCGCAGTAAATATTTGACCATAATGCCGTGCGACAGGCTGACAAGTGGATTCAAGATGGCGTAGAAAGTGAAGCTAGATACTCTGTCCCAGAGTCATGGAGGACAGGAGGCCCCAGAAGTCATGTGAAGAGGCCGTTGGATCGTTAGTAAGGCAGGACTATGACGCGGCGGTGGCCCATAGCACGGACGCCCTGCTGGCCCTGGGATCGACCCCACCCACCCCCAGCACACCCCTCCTCCGCAAGTGTGCACTCCTCTACCGCATAGCAGCCCTGCTCCAGCTGAAGGAGTATGATCGAGCTGATGAAGACTGTAAGCATGtgctggcTGAGGAGCTGGGTAAGGGTGAGGGAAGTTTCAGGGCTGGGCTGCAGAAAATGATGCTGGATGGAAGCCTACAGGAAGTCTTTACTGTTCTTTCTAAAGCTCTGTATGGAGAACCACTGAATGGAATCATGGCAAAGGATATGACGAGGTTGAAGATACTCCTGTCTGAAATGGAGGCTGTAAGCAGTAAAATGGTGACGGAGCAGtcaggagagacagaggaggACGTTCAAGAAGGTTGGCAGTTTCGGCCTCCTCCTCGAGGGGTGACTAGCAGCGAGGAGTACACATTGTGTAAAAGGTTTCTAGAGCAGGGTCTATGTCGGTATGGTGCACAGTGCACTTCAGCCCACTCTCAGGAGGAGCTGACTGAGTGGCAGCAGCGCTATGCCTCCAGACTCATCCGCCTCAAGCAGCAGCAAGATGGGAAGCATTACACTGAGAACTACACAGAGGCCCTCATTGAGAAGTGGATCAACTCCCTTACCCCAGAGAAAGTGCTTAATGACTGTGTAGATGGAGTTACAGTGGAACATAACTCAGATCTTTCAGTCACTGTCAACACCAAGAAGTCATCCCATGCCTGGACATTCTCACTTTACTGCAAGCCTGCCCGCATGTTGCACCGCATCGCCCTGCTCTACGATGCCAACCGAccacacttctccatcacagCCGTGTCGGCAGGTGACACCTCCACCCAGGTACCCCAGCAGGTGTGTGAGGGAGGCTGTCAGGAGTGGACTGGAGTAGGATTGCTACAGAATGGCATGGATCACTGCCTCTACACTGTGGAGGTGGCGTTTAGAACGGAGATATTTGGCACTTTCCGCCAGACCGTAGTCTTCGATTTCGGCTCTGAGCCTGTGCTGATGCAGAGAGTGATGGTGGATGCAGCGTCTATTGAAGACCTGGAGCATTTGATGCAGGCACGGCAGCAGCTCCTGATGACAGCAAAGCGCTGGGACTCATCCTGCAAGACCATCGTGGAGTTCAGTCCCAATGAGAACATGGAGCTGGAGCGCAGTCTGCTCAGCCGCTATCAGATCCCACTGTCCGCTGACCAGCTCTTCACCCAGTCCGTGTTGGACAAGACTCTCACACGTGAGAACTACCAGTCCCGCCTGCATGACCTGCTCTACATTGAGGAAATTGCACAGTACAAAGAAGTTAGCAAGTTCAACATTAAGGTAAACCTGCAGCTGGTCTCCAGCTTCATGCTGACGGGAATATCTGGGGGTGCTAAGTACGCCCAAAACGGCCAGCTGTTCGCCCGCTTCAAATTAACAGAGACCCTGTCCGAGGACACACTGGCAGGACGGCTGGTGATGACGAAGGTGAActcagtgctgctgctgcctgTGAGCCGGGATCGGATGTGTCAAGGCCAGCCTGCCAGTGCCAAGGAGCGCGTCTATGAGGCCTTGATAGAGGAGAAGACCAAGGACTACATCTTCTTGCGCGTCTGCAAGGACTGCTGTGAGGAGCTCAGTCTGATTCCTGACAGGGAGCTGCAGGTGGAGCTGCAGTTTCAGCTCAATCGGCTTCCGCTGTGCGAGATGCACTATGCTCTAGACCGCCTCCGTGACAACAGCATCCTCTTTCCTGACGTCAGCCTAACTCCTATAATCCCCTGGAGCCCTAACAGGCAGTGGGACGAGCAGTTGGACCCTCGTTTAAACGCCAAGCAGAAGGAGGCCATTTTGGCCATCAccactccactgtcaatcaATCTCCCTCCCGTGCTTATCATTGGACCTTATGGGACAGGCAAAACTTTCACACTGGCTCAGGCAGTGAAACACATCCTCAAACAGCCTGACACACGGGTCCTCATCTGCACCCATTCAAACAGCGCAGCAGATCTGTACATAAAGGACTACCTTCATCCATATGTGGAGGCAGGCAATCCACACGCAAGACCTCTCAGggttTACTTTAGGAACCGCTGGGTAAAAACGGTGCACCCAGTGGTGCAGCAGTATTGCCTGATCTCTGGAGCTTACCTCACCTTCCAGATGCCCACTCGGCAGGACATAGAGCGCCACCGTGTTGTGGTAGTGACGCTCAGTACCTCACAGTACCTCTGTCAGCTTGATCTGGAACCTGGGCTCTTCACACACATATTGTTGGATGAGGCAGCCCAGGCAATGGAGTGTGAGACCATTATGCCGTTGGCACTGGCTAATAAGAGCACACGCATCGTGCTTGCTGGAGACCATATGCAGCTCAGTCCGTTTGTGTACAGTGAGTTTGCACGGGAGAGGAACCTACATGTGTCCCTGCTGGACCGGCTGTATGAGCACTATCCCTCTGAGTACCCCTGCAGGATCCTGCTGTGTGAAAACTACCGCTCCCATGAGGCAATCATCAACTACACATCGGAGCTGTTCTACGAGGGCAAGCTGATGGCCAGCGGCAAACAGCCCCAGCATAAGGACTTCTACCCTCTGACCTTCTTCACGGCCCGTGGGGAGGACGTGCAGGAGAAGAACAGCACGGCTTACTACAACAATGCTGAGgtgtttgagattgttgagCGTGTGGAGGAAATGAGAAGGAAGTGGCCGGTAGCGTGGGGAAAGCTGGACGAAGGCAGCATCGGCGTGGTGTCCCCCTACGCAGACCAGGTGTTTCGCATCCGAGCCGAACTCCGCAAAAAACGCATGCCCGAGGTCAGCGTGGAGCGAGTGCTCAACGTTcaggGTAAGCAGTTCCGTGTACTATTCCTGAGCACAGTTCGCACTCGCCACACCTGTAAGCACAAGCAGACGGCCATCAAGAGGAAGGAACAGCTGGTGGAAGACTCCACCGAAGACCTGGACTACGGCTTCCTCTCCAACTACAAACTCCTAAACACTGCCATCACACGGGCCCAGTCCCTAGTGGCTGTAGTGGGAGACCCCATAGCGCTCTGTTCCGTGGGCCGCTGCAgAAAGTTCTGGGAAACATTCATCTCCATCTGCCATGATAACGGGAGTCTGCATGGAATCACATTCGAGCAGATCAAGGCCCAGCTGGAGGCTCTCGAGCTGAAGAAGACCTACGTGCTGAATCCACTGGCTCCCGAGTTCATCCCCCGAGCCCTGAGAGCCCAGCAGCCCCAGGGACCCGGCAAACACCAGCACTCCCCACCTAAGGTGAAAGGACAGCTTGCCAATCATGCAGAGCACTTTCCTCCTGAAGGGTTTGttcagCCCAGCGCTGCTGTACTAATGGGGAATCCTATCCAGGCTTTCACTCCAACGGGAGGAGGAGCACCACCCTCTGGCAAATCCCCCAGTCCTGTACAGCGCATTGACCCTCACACTGGAGCCAGCATCCTCTATGTGCCCGCTGTATATGGGGGCAACATGGTCATGCCTATGTCTCTGCCGTTACCATGGCCAGGCTATCAGAACCGCTTTGCCATGGACCCTCGCATCATGAGCCACCAGGCAGCCATGGCAGCCTACAACCTGAACCTGCGGCCTGCCGTCAGTCGGGCATCACCAGTGCTTTATGGTCTGAACCAGCCTTCCCCGCTAGGCATTGGCCAACTGCCATCCACTGACAAGGACTTGCTGCAGGAACCTACTGCCAATGGAAAGGTTGACATTAATGGAAAAGTGGAACATAGCAGGCTGCTGACACCTGAAAGGAAAGCTCCTGAACTGAAGGACAAACAgGGAGAGCCTGAGCCAATTCAGAACAAAAGCCCTGAAACCCATGCCGGCCTGGTGTTTCCCTCCAGCCGCCTTCTGCGTAAAGACCCACCTGCCCAGCGTCCGCCACTCAGCTTCCCTTTACCCCCTCCTCACCCAGCATTTGCCCCCCATGCCCCTCCCGGCCCCCTGGCACACTATGGCCTTCCCAGACCTCCCCTTCGTGTGCAGACCCAACAGCCACAGCCCTCTGCCTTCCCTCCCTCATTTTTCAGTGGCCACCCTCTGGCCCAGCGCACCCTGCACTCTCCAGGGCTGGACGGCCTTGACGGAGGGGACAGCCTGATGGGCACTGTGCCTGATGAACTGAAGAACGTTGTAAGAGGATTGCCTCCCCAGCACCAGCCCCATCAGCAGCCTATGCGCCTCAACAGCTTCGGGGAGGAGAGTCTCGACTCGCTGCTTGGCGACTCTCTGGATGGTCAAAGCTGTTCTGGCATGGAGACGTTGGCTCCTCAACCACAACAGCAGCAGCCGGTGCGTCTAGGCCAGTGGAACGAGCCTGGGCCCTTCCTGCAAGGTGCTGTGCCTCCTTTCACCCTGGCCCAGCAGTTGGCACACCTGGGTCAGCCAAGCATGCGGATCCCCCAGCAGCTGCTCCGTGCCAACTGGGGCCTGGGCACCACTGCTGAGGACGAGCCCCGTGCACCCATGCCCAGGTATCCTGGTCTCCCACGTGAGTCGCTCCCTCAGGAGTCGTATGAGCCACGTGACGCTGCTGAAATGCCCCCTCCTCAGTCACGCCTGCTACAGTACCGGCAGGTGCAGCAGCCCCACATTCCTGGAGAGCTGCCCTCACCTTCCACTGCCTCCTCTGTCCTCCCTTCATCCACCTCAAGCAGTTCAAACAACCACAACCATACTCCGGTCCCAGGGCCTTTCCCTTACCCAGAGACCAGCCGTGAGCTCCCTTTTCACCAGCAACAGGCCTTCAGCCAGGCCGCCCTCCCTCTACCCCCTGAGCACGTGCCCGTCAAGTACCTTCTGCCTGAGGCTCACTGGCATCATGCCGGGACACAGCAGTCCTCGACGCTGGCATTTGGCCTGCAGCAGGGGCCCTTCacacagcttcagcttcagcagcacaaacagcaacaacagcagctccAGGCCCCACACAATGCCCTGCACAGTCTAGAAGAGTATGAACCACGAGGGCCCGGACGGCCCCTGTACCAGAGGCGGATATCCTCCAGCTCTCCCCAGCCATATGGGGAGAGTGTGGTACAGTGTAAGGAGTCTCAGGATCCCACAGCCTGTTTCACATACCCCCCTGCAGACCTGTGGCCCAGCCCAGGCCCCGCTCCACTCCACAACATTCCATGCAATGGAGCGAGTCACCTCGTCCCTCAGAGGGATATTTTAGTTTCTAAGGCGGTGAATGCTGCAGAGGAACACATCCAGGCTGAGTGTGTGCAGCAGCCTCCTCACTCCGCTGGCCTTGCAGCGCTTCAGCAGCATGGACAGTTTCCAGCCCTCCTGCCCAGCAAGCAGACCCCCCCAGACCCGGGAGGAGTGGGCTCCATGCCAGCCTCGGGCCACAACAAACCCCCTGCCATGTCCTATGCCAGCGCCCTCCGAGCTCCCCCCAAGCCCCGCTGCCCGCTGCCTGAGCAGACCAAAAAGAACAGCGATCCCATCTCTCTGTTACAAGACCTTAGCATAGGGAGTTCCAACAGTAGCAATGGCTATTACTCGTATTTTAAGTaagtgaatatataaatatatatgaattatataCACCCTATTgagtgaaaatgattaaaaaaaattgaataacaatctacaaaaaaattcaacaataaaaaaaacagcttttgatTTTGGTCGGATAGTTAgccttttgtgttttattattttttacttaatttag

Function

symbol description
helz Predicted to enable RNA binding activity. Predicted to be involved in post-transcriptional gene silencing by RNA. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in P granule and cytosol. Orthologous to human HELZ (helicase with zinc finger).

NR:

description
PREDICTED: probable helicase with zinc finger domain

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K25168 HELZ; helicase with zinc finger domain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916301.2 True 5955 mRNA 0.55 31 10298887 10341715

Neighbor

gene id symbol gene type direction distance location
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding upstream 76013 10215045 ~ 10222874 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding upstream 103681 10192804 ~ 10195206 (+)
casc3 casc3 coding upstream 372684 9917962 ~ 9926203 (+)
msl1a msl1 coding upstream 381786 9912768 ~ 9917101 (+)
si:dkey-225f5.4 LOC108258433 coding upstream 405391 9886784 ~ 9893496 (+)
lmtk2 lmtk2 coding downstream 84344 10426059 ~ 10448685 (+)
bri3 bri3 coding downstream 133639 10475354 ~ 10484206 (+)
fam20ca LOC108274115,LOC108412745,LOC107713951,LOC107584184 coding downstream 406431 10748146 ~ 10798178 (+)
LOC113528286 rai1 coding downstream 467739 10809454 ~ 10846584 (+)
drc3 drc3 coding downstream 557924 10899639 ~ 10909807 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding upstream 72384 10225583 ~ 10226503 (+)
G208700 NA non-coding upstream 77348 10221283 ~ 10221539 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding upstream 236922 10039409 ~ 10061965 (+)
G208504 NA non-coding upstream 415760 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 440005 9846084 ~ 9858882 (+)
G208783 NA non-coding downstream 193 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 485310 10827025 ~ 10828913 (+)
G208916 NA non-coding downstream 513440 10855155 ~ 10857015 (+)
G209067 NA non-coding downstream 590344 10932059 ~ 10932428 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding downstream 601540 10943255 ~ 10947541 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 311114 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1235474 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1340787 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2290476 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2445378 7853191 ~ 7853509 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 7687 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 938365 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1225404 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1707692 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1793554 12135269 ~ 12140371 (+)

Expression


Co-expression Network