rpl23 (RPL23,rpl23,rl23)


Basic Information

Item Value
gene id rpl23
gene name RPL23,rpl23,rl23
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3066745 ~ 3072827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916306.2
ACACAAAGGGTCCTTAGAACGAGTGTGCTAAACCGGAAGTGTCGATTTCTGTGGTGCGCGCGACGTTATTTCCCAGCGTTCCTTTCTCCCTTCTTCCTCTTACCGTTCCGGCAGCAATGTCTAAGAGAGGACGTGGTGGTTCTTCTGGAGCCAAGTTCCGCATCTCGCTGGGTCTCCCGGTGGGAGCGGTCATCAACTGCGCCGACAACACAGGTGCCAAGAACCTGTACATCATCTCCGTCAAAGGCATCAAGGGCCGTCTGAACAGGCTTCCTGCCGCAGGTGTGGGTGACATGGTCATGGCCACCGTGAAGAAAGGCAAGCCAGAGCTCAGGAAGAAGGTGCATCCGGCGGTGGTGATACGACAGCGGAAGTCGTACCGGCGAAAAGACGGCGTGTTCCTGTATTTCGAAGACAACGCAGGGGTCATAGTGAATAACAAAGGGGAAATGAAAGgttCAGCCATCACGGGACCCGTAGCCAAGGAGTGTGCAGATCTGTGGCCCAGGATTGCTTCAAACGCCGGGAGCATCGCCTGAGCTCACTCGGcttgatttattttcaataaaatattgaaagtCCA

Function

symbol description
rpl23 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

NR:

description
60S ribosomal protein L23

GO:

id name namespace
GO:0006610 ribosomal protein import into nucleus biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02894 RP-L23e, RPL23; large subunit ribosomal protein L23e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916306.2 True 583 mRNA 0.54 5 3066745 3072827

Neighbor

gene id symbol gene type direction distance location
ccdc103 ccdc103 coding downstream 2934 3059168 ~ 3063811 (-)
LOC113528219 LOC108276187 coding downstream 7789 3057417 ~ 3058956 (-)
abi3a LOC108276098,LOC108434940 coding downstream 11778 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 232891 2789176 ~ 2833854 (-)
rarab rara,LOC108261354,LOC107554136,LOC108434941,LOC107689638,LOC107737746,LOC107695008,LOC107582978 coding downstream 291656 2739238 ~ 2775089 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding upstream 82154 3154981 ~ 3159263 (-)
LOC113528655 NA coding upstream 82469 3155296 ~ 3155430 (-)
LOC113528657 NA coding upstream 83790 3156617 ~ 3156709 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding upstream 110158 3182985 ~ 3191017 (-)
prr14 NA coding upstream 127320 3200147 ~ 3213935 (-)
G204524 NA non-coding downstream 33517 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 95876 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 466393 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 525220 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 564550 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 98435 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 528175 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 544344 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 557867 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 631456 3704283 ~ 3738959 (-)
si:dkey-283b1.6 NA other downstream 27093 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 528634 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 721833 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 871205 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 989268 2065888 ~ 2077477 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 1150 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 310004 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 696028 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 967654 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 1020086 4092913 ~ 4117643 (-)

Expression


Co-expression Network