rpl3 (LOC100304518,LOC103392522,LOC108434904,LOC103374755)


Basic Information

Item Value
gene id rpl3
gene name LOC100304518,LOC103392522,LOC108434904,LOC103374755
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3154981 ~ 3159263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916326.2
CAAAGCCTCCGGTAATGACGTATCCATCTCCACGGAGACTGCGCATAACCGCGCGTGCGCGGTTACATCCCACTATAAAAGCGCAGGCCGGCGGTTGGCGTGTTCTCTTTCAATCGGACCAGAGACAAGATGtctcACCGTAAGTTTTCAGCTCCCCGTCACGGGTCTCTGGGCTTCCTTCCTCGCAAGAGGAGCCGCAGACACCGCGGTAAGGTAAAGAGCTTCCCCAAGGATGACTCCAGCAAACCCGTCCACCTCACCGCCTTCCTGGGCTACAAAGCCGGCATGACGCACATCGTCCGTGAGGTCGACAGACCCGGCTCTAAGGTGAACAAAAAGGAGGTTGTCGAGGCAGTCACCGTTGTCGAGACTCCTCCCATGATCGTCGTAGGAATTGTGGGATACGTTAAGACTCCTCGTGGTCTGCGTTCCTTCAAGACCATTTTTGCCGAGCACATCAGTGACGAGTGCAGACGCCGCTTCTACAAAAACTGGTACAAGTCCAAGAAGAAGGCTTTCACTAAGTACAGCAAGAAGTGGCAGGATGAGGAGGGCAAGAAACAGCTGGAGAAGGACTTTGCCTCTATGAAGAAATATTGCAAGGTCATTCGTATCATCGCCCACACACAGATGCGCCTGCTGCCCCTGAGGCAGAAGAAGGCCCACCTGATGGAGGTCCAGCTGAACGGCGGAACCATCTCAGAGAAGGTGGACTGGGCCCGGGAGAAACTGGAGCAGGCCGTCCCCATCAACAACGTGTTTGCCCAGGACGAGATGATCGATGTCATCGGAGTCACCAAGGGTCACGGCTACAAGGgTGTGACAAGCCGTTGGCACACGAAGAAGCTGCCCCGTAAGACCCATCGTGGTCTGCGCAAGGTGGCGTGTATCGGAGCCTGGCATCCTGCCCGCGTGGCCTTCAGCGTGGCGCGTGCCGGTCAGAAGGGCTACCATCACCGCACAGAGATCAACAAGAAGATCTACAAGATTGGACAGGGCTACCACACCAAGGATGGCAAATTGATCAAGAACAATGCCTCCACTGATTACGATCTGTCCAACAAGAGCATCAACCCACTGGGTGGATTTGTCCACTACGGTGAGGTGACCAACGACTTCCTGATGCTGAAGGGATGTGTTGTTGGAACCAAGAAGAGGGTGCTGACCCTGCGCAAGTCTCTGCTGGTGCAGACGAGCCGTCGCGCTATGGAGAAGATCGACCTCAAATTCATCGACACCACCTCCAAATTCGGTCACGGACGTTTCCAGACTGTGGACGAGAAGAAGGCCTTCATGGGTCCTCTCAAGAAAGACCGCATTGCCAAGGAGGAGTCTGCCTGAGCACCACGCtgcactgctctgtgtgtggaTTCATGAATTGTCATGTAGCACTGCAgagatgtttaataaaaaaaaaaaaatggacaaaaa

Function

NR:

description
PREDICTED: 60S ribosomal protein L3

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02925 RP-L3e, RPL3; large subunit ribosomal protein L3e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916326.2 True 1431 mRNA 0.54 9 3154981 3159263

Neighbor

gene id symbol gene type direction distance location
rpl23 RPL23,rpl23,rl23 coding downstream 82154 3066745 ~ 3072827 (-)
ccdc103 ccdc103 coding downstream 91170 3059168 ~ 3063811 (-)
LOC113528219 LOC108276187 coding downstream 96025 3057417 ~ 3058956 (-)
abi3a LOC108276098,LOC108434940 coding downstream 100014 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 321127 2789176 ~ 2833854 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding upstream 23722 3182985 ~ 3191017 (-)
prr14 NA coding upstream 40884 3200147 ~ 3213935 (-)
cd2bp2 cd2bp2,LOC107554127 coding upstream 55223 3214486 ~ 3218927 (-)
LOC113528532 tbc1d10b,LOC107737756,LOC107554125,LOC107582992 coding upstream 88438 3247701 ~ 3271970 (-)
abcc1 abcc1,LOC107654509 coding upstream 193902 3353165 ~ 3396356 (-)
G204524 NA non-coding downstream 121753 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 184112 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 554629 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 613456 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 652786 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 11999 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 441739 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 457908 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 471431 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 545020 3704283 ~ 3738959 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 76963 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 115329 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 616870 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 810069 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 959441 2112445 ~ 2195540 (-)
nde1 nde1 other upstream 223568 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 609592 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 881218 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 933650 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1563154 4722417 ~ 4734902 (-)

Expression


Co-expression Network