hirip3 (hirip3,LOC107689078,LOC107552470,LOC107739380)


Basic Information

Item Value
gene id hirip3
gene name hirip3,LOC107689078,LOC107552470,LOC107739380
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8921509 ~ 8927911 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916344.2
AGGGACGGAGACACGCCACCACTGCGCTATCTCGGACACGAGATTCGGATATTGTGTCGCTATATTTTTCGACACATTATTTCTTAATGTAGTGACAAAACGCGGGGAATATGGGACCGTCTAAACACTATCAAAGGGATTTCGAATCGCCAGAACGCGAGTACGTGATGACGCAGCGCAGCGTGCGCGCGACCGGTAGAGAGCGCGCCAAACCTGGAAGTGCGCGAGATCTTCGCGTCGTTTCCTCCCAGCGAAGTGATCTTTTGATTTAGCGATGGTTTCAGAGGCTGTAGCAATCCGCAAGTTCGTCTCCCGAGAGCTGCAGAGGTGCTCCCTCAGcaCTTTGACACTTGGCATACTACGAAAGAAGTATCTGGAGCATGTGGGCAGGGACTCACTCACTGCAGAACACAGACAGCTGCTCAAGCAAATCGTAGAAGAAGAACTATTAAAAATGCAGGACAGCAGCAGTGATGATGAACCATTAATAATGAGTGTGAGTCCACCACAGAATCAAAATAAACGGAAAAGGGAAGACGaagaagatgaggaagaggCGCAAAACAAAGATGATGTGTCTAGAAAGAAGAAATCACGTTTTGCGCCAGATCCCCCAGATTCCCCAGACTCTGGAATAGAGAAAGTAGCAAATGAGGAACAGCTTAAAGAaggggatgatgatgatggaagTGATAAGGACATGGAAGAAGAGAGTGAAGAAGAACAGAATGCAAAGACTCAAAGGAAGAAGCCAAAAGAACAGCGTAATGTGAAAAGGAATAGGAAGGGGAAAATGAGCTCAGAaagtgatgaagaggaggaggaggaggagcagaaaaATAAGGCAAAGAAGAAGGGGAAGGTTTTAGATAGTGACGAAGATGATCACATCAGCTCCAGCAGTTCTGATGaagacaaagaaaatcagcacgCAAAAGCCAGAGGTGGAAAGACAAAGCAAAGCACGAGCTCTGACAACGAGGAGGAGGTGAGTGATGAAGACTTGAAAGATGaagacaaagaaaatcaaaagaaaGCAAAAGCTAGAGGTCGAAAGAAAAAGCAAAGTGTGAGTTCGGACAGCCTGGAGGACGTGAGTGGTGAAGAGATGAAGAACAAAGGTGAGATAAAGGATGTTGGAAAAAAGAGCAAAGCAGCCGctcagaagaagagaaaaagaaaagaggataAAAAAGAGCCAAAGTCACCGGAGAGTGAGGCGGTTAGAAAAATGCAGAAGGAAGTCTTCGGGAGTAGCTCTGAAAGTGAAGAAGACGAGGCAAGGAAAACAGAAAGGAAAGGCACGAGTGAGAGCAGTGAAGACGAGAGtgataaagaaatgaataaaaagaaagatgttGATAAAGTGTCCTCTGATGAAGAAGTGAAAGAAACAGTGAAAGCAAAGGATAAAGACAGGGAAGAGGCAGAGGATTCAgactcctcctcttcttccttgcCCTCTctggaggaggatggagaagCAGGGGGGAAGAAGCCGaaacaggaagaagagaagaaaaaaaagagtgtgtcAAAGAAAAAGAGTAGTGAAATGAGTGAAAGCAAGGCCAAAGGAGGAAAGGATGATGAGAATAAAGCCGTGTCTAGACTTAAGCGCTACATCGCTCTCTGTGGCGTACGGCGTAACTATAAGAAGCTTTTAGAGGGCTGCCGCTCAGTGAAGGCCAAAGTTGCTGTGCTCAAGAAAGAACTGGAAGAGCTGGGGGTGGAAGGTCAGCCGTCCATAGAGAAGTGTAAAAAGGCCAGAATGAAGAGAGAGGAAGCTCAGGAGCTGGCAGAACTGGATGTCAGCAACATAATCACCACTCAGGGTCGTCCTAAACGGCGAGCTGCAGCACCATGGACGAATTTTCAGAGTAGCTCACCTCCACCATCAGCCTACAAACGTGTGGTGGGCTCTGACTCAGACAGTGAAGAGGGCAACACGGGCAAGAGGCGCAAGAGAGCAACAGACTGGCACAATCTGCAGGGGATCATCAGCGATGACGCAGACAGCAACTAGCCAGCTTTCTCACTATAGACTGTAGACGAAGTGTTCATAATGTATTCTGTTCAAGCTCTTCAGTCTATTCTAAGTTTGTTACCATGTTTTCCTATGATGAATATTTATCAGTGCACTACTTTTATATGCTAATGTTCCTTTATGCaatttattgaaataataaagaattGTCATTTGta

Function

symbol description
hirip3 Acts upstream of or within brain development. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human HIRIP3 (HIRA interacting protein 3).

NR:

description
HIRA-interacting protein 3 isoform X6

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916344.2 True 2205 mRNA 0.46 8 8921509 8927911

Neighbor

gene id symbol gene type direction distance location
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 86773 8811408 ~ 8834736 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding downstream 112528 8805242 ~ 8808981 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding downstream 118654 8795520 ~ 8802855 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding downstream 128094 8783399 ~ 8793415 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding downstream 142441 8764679 ~ 8779068 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding upstream 1700 8929611 ~ 8936540 (-)
sez6l2 sez6l2,LOC107660756 coding upstream 9652 8937563 ~ 8953319 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding upstream 45376 8973287 ~ 8983377 (-)
lat LOC108257259 coding upstream 94635 9022546 ~ 9032032 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 104933 9032844 ~ 9044136 (-)
G208063 NA non-coding downstream 6950 8871976 ~ 8914559 (-)
G208062 NA non-coding downstream 48007 8860563 ~ 8873502 (-)
G208016 NA non-coding downstream 272146 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 386797 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 428468 8492815 ~ 8493041 (-)
G208097 NA non-coding upstream 27531 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 27955 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 29350 8957261 ~ 8958211 (-)
G208145 NA non-coding upstream 79089 9007000 ~ 9007259 (-)
G208151 NA non-coding upstream 96850 9024761 ~ 9024983 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 208191 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 631701 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 636917 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 653871 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1216017 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 185055 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 268585 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 481893 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 536420 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 801940 9729851 ~ 9732566 (-)

Expression


Co-expression Network