cbx1a (LOC108279860,LOC108413138,LOC103037352)


Basic Information

Item Value
gene id cbx1a
gene name LOC108279860,LOC108413138,LOC103037352
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9490348 ~ 9501580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916348.2
AGGGCGCCATTTGGGACAAGGCCGCAGAGagccggtgcgtgtctgcagcTACAGTGGCTCCGTCTCAGAACTGCAACTCCCATGATTCCACCTTCGTACGTCATCAGCCTCGGTCGGAATTGGCGGGTCGCAAAATCTTTTGTCTGGCCGAGTAACGAGTCTATTTCTGCAAAACCTTttcttaaaaacatttcaaacgCCCTGCGgtactttttattaaaaatctgaTAAATTAGCACTCATTTGGGGGTGTTGCTGCGCCGCTATTTTATTCATCCAAAGCTCTTTTGACGTTGACAAGGAACCAGAAGGTTCCGCAGACTGTTCCCCGACGAGTATGAGCCAGCCAACAGACAACACTAGTGATGCTGCCGGTGTCACCTCAGAACCTGCACAGGCAGCTTCCAAACTGGCATCCACCGGAGGAAAGAAGCAGAACAAGAggaaggtggaggaggtggtagaagaggaagaggaagaataTGTGGTGGAGAAGGTTCTGGACCGGCGGGTGGTGAAGGGCAGAGTCGAGTACCTGCTCAAATGGAAGGGCTTCACAGATGAAGACAACACATGGGAGCCTGAAGATAACCTTGACTGTCCAGACCTGATAGCAGAGTTCCTGCAGTCACAGAAGAAGGCTGGAGATGAGAAAAAAGACACAGGTGGCAAGAGGAAAGTGGGAGAGTCAGATAATGAGACAGGCAGTGAAGACAGGCCTAAGAAGAGGAAAGATGAGGAGAAGCCACGGGGCTTTGCTCGGGGATTGGATCCTGAACGCATTATTGGAGCCACAGATTCCAGCGGAGAGCTGATGTTCCTCATGAAGTGGAAAAATTCAGATGAGGCAGATCTTGTGCCAGCAAAAGAAGCGAATGTCAAGTGCCCACAAGTAGTTATTTCATTCTATGAGGAACGACTAACGTGGCACTCGTACCCcaatgaggaagaggagaagaaagatgacaaaaactaaacaataGGCAGAAATGAGCAACATGGTGGTTATAGACAGAATGGCagaaagtggtttttttttttttggtgaaacttTTTAACTTTTGCCATAGATCTTGGACACTTGGATATTGTGTAGAAAACACGCGTACAGTGGTGGGGTTTTCTGgagataaaatattaaagagtCTGTATAGCAACTGCAGAAATACTTCTCCATTTGATCcatctcctttcttt
>XM_034309695.1
CTTAGGGCGCCATTTGGGACAAGGCCGCAGAGagccggtgcgtgtctgcagcTACAGTGGCTCCGTCTCAGAACTGCAACTCCCATGATTCCACCTTCGTACGTCATCAGCCTCGGTCGGAATTGGCGGGTCGCAAAATCTTTTGTCTGGCCGAGTAACGAGTCTATTTCTGCAAAACCTTttcttaaaaacatttcaaacgCCCTGCGgtactttttattaaaaatctgaTAAATTAGCACTCATTTGGGGGTGTTGCTGCGCCGCTATTTTATTCATCCAAAGCTCTTTTGACGTTGACAAGGAACCAGAAGGTTCCGCAGACTGTTCCCCGACGAGTATGAGCCAGCCAACAGACAACACTAGTGATGCTGCCGGTGTCACCTCAGAACCTGCACAGGCAGCTTCCAAACTGGCATCCACCGGAGGAAAGAAGCAGAACAAGAggaaggtggaggaggtggtagaagaggaagaggaagaataTGTGGTGGAGAAGGTTCTGGACCGGCGGGTGGTGAAGGGCAGAGTCGAGTACCTGCTCAAATGGAAGGGCTTCACAGATGATGCTTTTAATGTCCCAAATAGTGAAGACAACACATGGGAGCCTGAAGATAACCTTGACTGTCCAGACCTGATAGCAGAGTTCCTGCAGTCACAGAAGAAGGCTGGAGATGAGAAAAAAGACACAGGTGGCAAGAGGAAAGTGGGAGAGTCAGATAATGAGACAGGCAGTGAAGACAGGCCTAAGAAGAGGAAAGATGAGGAGAAGCCACGGGGCTTTGCTCGGGGATTGGATCCTGAACGCATTATTGGAGCCACAGATTCCAGCGGAGAGCTGATGTTCCTCATGAAGTGGAAAAATTCAGATGAGGCAGATCTTGTGCCAGCAAAAGAAGCGAATGTCAAGTGCCCACAAGTAGTTATTTCATTCTATGAGGAACGACTAACGTGGCACTCGTACCCcaatgaggaagaggagaagaaagatgacaaaaactaaacaataGGCAGAAATGAGCAACATGGTGGTTATAGACAGAATGGCagaaagtggtttttttttttttggtgaaacttTTTAACTTTTGCCATAGATCTTGGACACTTGGATATTGTGTAGAAAACACGCGTACAGTGGTGGGGTTTTCTGgagataaaatattaaagagtCTGTATAGCAACTGCAGAAATACTTCTCCATTTGATCcatctcctttcttt

Function

NR:

description
PREDICTED: chromobox protein homolog 1-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916348.2 False 1197 mRNA 0.47 6 9490348 9501577
XM_034309695.1 True 1224 mRNA 0.47 6 9490348 9501580

Neighbor

gene id symbol gene type direction distance location
LOC113528600 LOC108258913 coding downstream 77738 9401685 ~ 9412610 (-)
adsl adsl coding downstream 98988 9380674 ~ 9391360 (-)
tmem150b tmem150b coding downstream 110752 9373152 ~ 9379596 (-)
pdgfbb LOC108260470 coding downstream 154718 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 204408 9247782 ~ 9285940 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 152863 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 168029 9669609 ~ 9673077 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 174182 9675762 ~ 9722637 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding upstream 196451 9698031 ~ 9702424 (-)
hoxb5a hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384 coding upstream 209559 9711139 ~ 9713742 (-)
LOC117598997 NA non-coding downstream 44244 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 387222 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 426841 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 459370 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 465365 9024761 ~ 9024983 (-)
G208473 NA non-coding upstream 244916 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 328047 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 335670 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 413327 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 562397 10063977 ~ 10066356 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 15870 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 70764 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 286708 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 347477 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 777030 8707954 ~ 8713318 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 228271 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 949144 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2140577 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 2198269 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2796196 12297776 ~ 12315498 (-)

Expression


Co-expression Network