Item | Value |
---|---|
gene id | hoxb3a |
gene name | hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047607.1 |
NCBI id | CM018553.1 |
chromosome length | 26458119 |
location | 9675762 ~ 9722637 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
hoxb3a | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; hindbrain neural keel; nervous system; neural crest; and pharyngeal arch. Orthologous to human HOXB3 (homeobox B3). |
hoxb3 | Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in angiogenesis and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. |
description |
---|
PREDICTED: homeobox protein Hox-B3 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0007275 | multicellular organism development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
K09303 | HOX_3; homeobox protein HoxA/B/D3 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026916403.1 | False | 2327 | mRNA | 0.51 | 5 | 9675762 | 9722637 |
XM_026916404.2 | False | 2546 | mRNA | 0.51 | 5 | 9675762 | 9704997 |
XM_026916406.2 | False | 2032 | mRNA | 0.52 | 5 | 9675762 | 9710305 |
XM_026916409.1 | False | 1837 | mRNA | 0.53 | 4 | 9675762 | 9684649 |
XM_026916410.2 | False | 2558 | mRNA | 0.49 | 4 | 9675762 | 9688511 |
XM_026916411.2 | False | 1959 | mRNA | 0.52 | 4 | 9675762 | 9684482 |
XM_026916412.2 | False | 1853 | mRNA | 0.52 | 4 | 9675762 | 9691963 |
XM_026916413.2 | False | 2231 | mRNA | 0.51 | 4 | 9675762 | 9685167 |
XM_026916414.2 | False | 1925 | mRNA | 0.51 | 4 | 9675762 | 9685404 |
XM_026916417.2 | True | 3420 | mRNA | 0.48 | 3 | 9675762 | 9682453 |
XM_034309936.1 | False | 1730 | mRNA | 0.52 | 4 | 9675762 | 9691742 |
XM_034309937.1 | False | 1730 | mRNA | 0.52 | 4 | 9675762 | 9710209 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
hoxb2a | hoxb2,LOC107687781 | coding | downstream | 2685 | 9669609 ~ 9673077 (-) |
hoxb1a | hoxb1,LOC108274656 | coding | downstream | 17356 | 9654443 ~ 9658406 (-) |
cbx1a | LOC108279860,LOC108413138,LOC103037352 | coding | downstream | 174182 | 9490348 ~ 9501580 (-) |
LOC113528600 | LOC108258913 | coding | downstream | 263152 | 9401685 ~ 9412610 (-) |
adsl | adsl | coding | downstream | 284402 | 9380674 ~ 9391360 (-) |
hoxb7a | hoxb7 | coding | upstream | 1724 | 9724361 ~ 9728854 (-) |
hoxb9a | hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 | coding | upstream | 14366 | 9737003 ~ 9741333 (-) |
hoxb13a | hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 | coding | upstream | 45230 | 9767867 ~ 9769918 (-) |
nr1d1 | nr1d1 | coding | upstream | 174229 | 9896866 ~ 9904394 (-) |
ppp1r9ba | ppp1r9b,LOC108412948 | coding | upstream | 265479 | 9988116 ~ 10033085 (-) |
G208391 | NA | non-coding | downstream | 170012 | 9494623 ~ 9505750 (-) |
LOC117598997 | NA | non-coding | downstream | 229658 | 9441986 ~ 9446104 (-) |
G208189 | NA | non-coding | downstream | 572636 | 9102911 ~ 9103126 (-) |
G208158 | nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 | non-coding | downstream | 612255 | 9061580 ~ 9063507 (-) |
G208153 | NA | non-coding | downstream | 644784 | 9030525 ~ 9030978 (-) |
G208473 | NA | non-coding | upstream | 23859 | 9746496 ~ 9748039 (-) |
LOC117599011 | NA | non-coding | upstream | 106990 | 9829627 ~ 9927942 (-) |
LOC113528446 | NA | non-coding | upstream | 114613 | 9837250 ~ 9838412 (-) |
G208613 | msl1 | non-coding | upstream | 192270 | 9914907 ~ 9917529 (-) |
G208649 | NA | non-coding | upstream | 341340 | 10063977 ~ 10066356 (-) |
copz2 | copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 | other | downstream | 201284 | 9464331 ~ 9474478 (-) |
prr15la | LOC108273894,LOC108412372 | other | downstream | 256178 | 9409804 ~ 9419584 (-) |
dnal4a | dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 | other | downstream | 472122 | 9196496 ~ 9203640 (-) |
LOC113527952 | LOC108260010,LOC108274064 | other | downstream | 532891 | 9112966 ~ 9142871 (-) |
ndufa4l | ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 | other | downstream | 962444 | 8707954 ~ 8713318 (-) |
hoxb8a | hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 | other | upstream | 7214 | 9729851 ~ 9732566 (-) |
tecpr1b | LOC108276900 | other | upstream | 728087 | 10450724 ~ 10470518 (-) |
hmox1a | hmox1,LOC108432221 | other | upstream | 1919520 | 11642157 ~ 11647997 (-) |
zgc:162612 | foxd1,LOC108278341,LOC107757501 | other | upstream | 1977212 | 11699849 ~ 11701172 (-) |
LOC113528332 | hs3st6,LOC102795972 | other | upstream | 2575139 | 12297776 ~ 12315498 (-) |