hoxb5a (hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384)


Basic Information

Item Value
gene id hoxb5a
gene name hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9711139 ~ 9713742 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916418.2
CTCCAGTAGGTGACGCTGTCTGCTCACATGCAGCATATCCTTGCAATGGGAGGCACACGAATGCTCGAGGCTACAACTCCCCGTCTCGTCATCATTTGTAACCATAGAGCATGAATTACCTCTTGAAGTCATCAGTGAGAATTTACGACTGGTCAACAAAAGCACGTGATTCCCAAACGCACCCCCACCCCCATATTTGGCCGCATACATAGCAAAAACGAAGTACAGTGCATTGCtataattcattaatacatCATAAATCGTGAAGCACAGCGTTATAACGACCAAGATCTACAAATCAAGCTCGCTAAAACAACCTAAATGAGCTCTTACTTTGTAAACTCGTTCTCAGGGCGCTACCCAAATGGCCCTGACTATCAGTTACTAAATTATGGAACTAGCAGCAACGCTATGAACGCCTCGTACAGGGACTCCGGCACCATGCATTCAGGCTCTTACGGCTACAACTACAATGGGATGGACCTAAGCGTCAACCGTTCAGCCAGCACTGGCCACTTTGGGGCGGTTGGGGACAATTCCCGGGGCTTCCAATCTCCAGCCCCGGAGACGCGATTCCGGCAGCCGTCAAGCTGCTCGCTCGCATCCCCGGAGCCGCTGCCCTGCTCTAACAGCGAGAGCCTAGGACCCAAAGGCTCTTCACCCCCTTCCGACCAAAGCTCTTCTGCTGCGAGTAGTAACCTCACCAACAGCACACATTTTACAGAAATCGACGAGGCCAGTGCTTCATCTGAGACCGAAGAAGGCTCCCACAGAGCGGCCAACCAAGCTCCGCGGACGCTGCAGAAGCAAGAGACCACGGCAACCTCCACCAGCTCGGCGACTGCCGATGGCCAAGCGCCACAAATATTCCCTTGGATGCGGAAACTACACATTAGCCATGATATGACTGGACCAGATGGAAAAAGGGCCCGAACTGCCTATACCCGTTATCAGACGCTAGAGCTGGAAAAAGAGTTCCATTTTAATAGGTATCTCACCCGGAGGAGAAGGATAGAGATAGCCCACGCTCTATGCCTCTCAGAACGTCAAATTAAGATCTGGTTCCAAAACCGGCGgatgaaatggaaaaaggaCAATAAGTTGAAGAGCATGAGTCTGGCTACCGCAGGTAGCGCTTTCCAACCATAGTGGTAACGCAAATCATGCTGTAAGTGCTGCAATGAAATCGCGTGGAGAGGATAGATGGGGAAATTTCAATAGACTATTACTGAGTACTGTAAAAGCGGCACCTTTCGGCATGTTTTGGGGTATTTAAGTCAACTTAAAATTTTACTGTGGTACtgctaaaattaaaacaaattagtgTTCACATGCTGttcttttaataatttgattattatttccagtgagaaaatgaacaaaaaaagaaaaaaatgccgCTCGTTGTCCTTGTTATGAATATTGTTTGTCAAGTGCTATGTATAATGCTTTGAGAGTTAGCATGTTAACTAAATGTTATAACTTATTTACTACCTATAACTTGTATACCTTTGAGTTTACAGCGATGCTTCTGCCCAAATATGAAGTGATGCTCTAGTTAGCTAGCTCTAGTAGTGACTGCATTCATTTTAGCAGAAGTAAAGCTTCTGTGTTCCATGGTCATATATGTTTGAAGTCATTGTCTAGATAAACTCATTAGACTTTTGTCATGTGCTCAAATTCTtcaattatttttgaaaaaaaaaggaaatttgtaAATAGTCCTAGAGTCCTGTATCCGTCCCACGTGTGTATAGTTATATTCAAATTATGTAATTGTATATTCCTGGATCATGTTCATGTTCCTAAAATGATGTACATATTGAACACTTTTATTGTGACCATTTGGCTATTTGTAGTAGGCAGAGTGAATGGCAAATGTGTGTGGGAAAAAAGCCATGTCGAACTGCCTGTACGCATTTTGCCAATTagctttttgtatttgtttgtagcTTAACTTggagtaaaaaataaagttctCATATTATTCAGACCCATCA

Function

symbol description
hoxb5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesenchyme; mesoderm; neural tube; and somite. Orthologous to human HOXB5 (homeobox B5).

NR:

description
PREDICTED: homeobox protein Hox-B5a-like

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916418.2 True 2000 mRNA 0.44 2 9711139 9713742

Neighbor

gene id symbol gene type direction distance location
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding downstream 8715 9698031 ~ 9702424 (-)
hoxb2a hoxb2,LOC107687781 coding downstream 38062 9669609 ~ 9673077 (-)
hoxb1a hoxb1,LOC108274656 coding downstream 52733 9654443 ~ 9658406 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding downstream 209559 9490348 ~ 9501580 (-)
LOC113528600 LOC108258913 coding downstream 298529 9401685 ~ 9412610 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding upstream 1268 9715010 ~ 9717469 (-)
hoxb7a hoxb7 coding upstream 10619 9724361 ~ 9728854 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding upstream 23261 9737003 ~ 9741333 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding upstream 54125 9767867 ~ 9769918 (-)
nr1d1 nr1d1 coding upstream 183124 9896866 ~ 9904394 (-)
G208391 NA non-coding downstream 205389 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 265035 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 608013 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 647632 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 680161 9030525 ~ 9030978 (-)
G208473 NA non-coding upstream 32754 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 115885 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 123508 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 201165 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 350235 10063977 ~ 10066356 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 236661 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 291555 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 507499 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 568268 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 997821 8707954 ~ 8713318 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 16109 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 736982 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1928415 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1986107 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2584034 12297776 ~ 12315498 (-)

Expression


Co-expression Network