hoxb4a (hoxb4,hoxb4a,LOC107740620,LOC107585041)


Basic Information

Item Value
gene id hoxb4a
gene name hoxb4,hoxb4a,LOC107740620,LOC107585041
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9698031 ~ 9702424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916419.2
tatttattttgcgaGGTTTTCCCCCTGTGAGACATCAGAGACTAGGAGCGTTGTTTCTCATTAACTGTACCACTGAAGAGTAAAGTCTTGTTTAGCTTTTCTGTCGTATTAGCATTGTTTGTAAAGAAGGGCCAATCCATTCCTTTAGATCAATGATACAATAAAGGCAGATTACTCCAGGTGTAACACCTTGACATGGAGGAGGAGCTGTCAAGGTGAGTAACTCCATTCGATATCTGTCGAGAGGACACCTGTCATCTATATATACCCTGTAGATCCGGATTTGTGtgaacagacacacagtcacaaaTTCGTATCTAGGGGAGTATGTAGTTGATATATAGACCGCAATGCAACATCAACGGAAAAAGAAGACATCAATATATAACtttaggatttttttcccttttttaattaaaataatacaggTCTGTCCGCAAAAGGACGTCATCAACGAAAATTTTAGCTTCAGTTGTACATAGCTTTAGTGTTATTTGAAACAAATTTCAGTTTCCTGGAGTTAAATACCAGTGATTATCTCGCTAGCATTTTCCTAGAATCGTAAGAATCAAGGCAAAAGGCAAAGTACAAGCAATGTTAACGGTTAATGGTCAATTATGCTTGGGGTGTAAATCAAAATGCAGAATAAACGCGCTCTTTGTATGGGGAATGACTGCAGAGTGTGCTTAAATGCAGAAGACCTTAGTTTTGATTTAGGAGGCTTTGTAACCTGAATtagttgatgaattttctatcgATCCTAAACAAGCCCAGATTTATCTCTGACACGCAGATCACGCCACCTCCATTCTATCACCATTATTAGCAAGTGCATTTAAGAGCTTCGTCAGAGAGAGCGGTTTGCCCTTTCACATGGTATCGCTTTTCATGAGTACTGGCCAAAAATAAAGGAGTATTCAAGTTCAGAACATCTGAACCACATTTTGGAGAGGAGTATGTATGTTCTCATTAGACTGAGGTACTCAAGACGAAAGAGAGGGGGAGTCGCTTAGTCTCGGAGGTCTGTGCTTGTGTAAAAGTCCAGGGTGGCTTTATCGGCATGACAGTTTCCGCTAATGAGTGCTTTGTTTCAActaccagtttttttttaaactcaaaacAACGCATTAAAATATGAAACGTGGTTATACTGTCCCAAACTGTGCGCTGATATTGAACACAATCTAAACTGCTTTTTCTCGTTTCCTAATCCGGGAATTGGAAGGATGCACGCCATTGGCTACTGCTGTCACGTGGACTCTTAACTTTGTTCACTTGACAGAAAGTAGGAGGGTTTTACGAAACAGGAAAACGAGTAAAGGGATAGATATAAATTTTAGTATATTTTGTGTGCAATTCAAAGAAATTAATGGCCATGAGTTCCTATTTGATCAACTCCAACTATGTGGACCCCAAGTTTCCACCGTGCGAGGAGTACTCCCAAAGCGACTATCTACCCAGTCACTCTCCGGACTACTATAGCGCCCAGAGGCAAGAGCCATCGTTCCAGCATGAGTCGATCTACCATCAGCGGTCGGGCTGCGCCGATCCACCCTACTCGTCGTGCCAGGGTCCAGGGCAGCCCGCTGTGGTGATGTCTCCTCGGGGTCACGCACTAAACCCAGCTGCACTCTCGACCCCTCTCCCAGAACCAAGCCACCACTGCGACTCGGTAACTCCGAGCCCTCCGCCTGCTTGCGGTCAGACCCCCATTAACCAAAGCACTCCATCGGCCACTTCTCGAAAGGATCCCGTGGTGTACCCCTGGATGAAAAAAGTCCACGTAAATATCGTGAGCCCGAACTATTCGGGGGGAGAACCCAAGCGCTCACGCACAGCTTACACGCGACAGCAAGTTCTTGAGCTGGAGAAAGAGTTCCACTACAACCGCTATCTTACTCGCCGGCGCAGGGTGGAAATCGCCCACACCCTTTGCCTCTCCGAACGACAGATAAAGATCTGGTTTCAAAACCGGCGTATGAAGTGGAAGAAAGACCATAAGCTGCCCAACACGAAGATCCGCTCCAGCAACTCGGCCAGCTCGAGTTTAAACGGCGGCCCCTTGTGCAGTACTCAGAACCGTGCTAGCGGACCACCACAGACTCTATAGCTTGCTTGCGCTCTTCAGAAAGACGCACATTTTAAGACCTCAGTTTTAGGAGTGAGGCTCTAGAAATTGTCAACCCTCTCATCGCTTGTAAACGACATGGATATAACACGAGGTGGGGGAATAATAAGGTGCACagggaaaaatattttaaacacaaatgggGTGAAGACTCGAACTCAAACACTTCTACATTTGTGCTCACTCCCAGTTCAGTTCTGTCCTGTGCCCTTCTTGGTTCCTGCTCCCTCGACCCCTCCATAACAACAGAAGGCAGCAGACAGTTTTCAGATTTGGTGAAGATGGATCCCTGCTTCATCTTTAATCATGCCAAACTCAGTCCCATTTGTCATGTTTACTCTGTGGCACAAAGGATGAACCGTAGGCCTGCCCATTACCTCGACGTCTAGAATTGTGCCTAATAAATGAGTCTCCTTGTTTTGTCAAGAGCCATTTTCAAAACCCCCTTTATTTGCTGGCTTGTAGCCTACAAAAGTAGCCGAACATTGTTCTCTTAACATGAAGCTCCTCTTTCTCGCTAACGTTACtcttacatttaatattttgtgttgCCAGTGGGGTTGATTAAGATTGTGTGAGGTCTAGATGTCCTTTCTTGGACATACGAGAACCTTACTGGTCACTTTTCTGTGTCTAATTATTTAGCGCATTTCAAATTGAGAACAGGGAAATCAGACGGTGTGTACGAAAATATCTGATTTAGGTATTATTCATATTCAGCTGAACGTAAGAACAGTTGAATGAAACTGGGCATATAGATAACCAAAACAGTACAAtgcaaaactatttaaaaatgagCACTGCTAAATACTATTTGAATTACCTCAGTTGATaggttttttatgtttttattgtctAGTTTTATGAAGTGATAAGTTTGAAGTCATTTGATCAGAATGCAATTTTCTGCAAAAATATCAGCATTTATTTGTAAGTTGcaatgtaatttaaatattcGTGTCGCCAGGGCTGTGTAGAGAAAATGCGTatattgcatgaatgaatgagctaCACTATTTTTCGTTTTTCCTGTTACCTCGTCTTTaagtttctgtttttattctacGTCAGATAAACATATGCACGTATGtcatccttctttctttctttctttttctttctttctttctttctttctttttattacttctaatgtgttgatattttatcgtttataagattatttttaCATTCCAAAGATCAGTCTTCCTGGTGATGatgtattttccttttttttcacatttctatGTCTCCTCCTTTCTGCTTAGGCCTTTCACTGTACACCTTTGTTATTTGTAAATAGCTAtagaaatttaataaataaaaaataataatcactgtA

Function

symbol description
hoxb4a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural keel; nervous system; neural rod; pharyngeal arch; and somite. Orthologous to human HOXB4 (homeobox B4).
hoxb4 Enables sequence-specific double-stranded DNA binding activity. Involved in hematopoietic stem cell differentiation; positive regulation of stem cell differentiation; and positive regulation of transcription by RNA polymerase II. Located in centrosome and nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916419.2 True 3470 mRNA 0.42 2 9698031 9702424

Neighbor

gene id symbol gene type direction distance location
hoxb2a hoxb2,LOC107687781 coding downstream 24954 9669609 ~ 9673077 (-)
hoxb1a hoxb1,LOC108274656 coding downstream 39625 9654443 ~ 9658406 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding downstream 196451 9490348 ~ 9501580 (-)
LOC113528600 LOC108258913 coding downstream 285421 9401685 ~ 9412610 (-)
adsl adsl coding downstream 306671 9380674 ~ 9391360 (-)
hoxb5a hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384 coding upstream 8715 9711139 ~ 9713742 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding upstream 12586 9715010 ~ 9717469 (-)
hoxb7a hoxb7 coding upstream 21937 9724361 ~ 9728854 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding upstream 34579 9737003 ~ 9741333 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding upstream 65443 9767867 ~ 9769918 (-)
G208391 NA non-coding downstream 192281 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 251927 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 594905 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 634524 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 667053 9030525 ~ 9030978 (-)
G208473 NA non-coding upstream 44072 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 127203 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 134826 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 212483 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 361553 10063977 ~ 10066356 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 223553 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 278447 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 494391 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 555160 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 984713 8707954 ~ 8713318 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 27427 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 748300 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1939733 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1997425 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2595352 12297776 ~ 12315498 (-)

Expression


Co-expression Network