LOC113528094 (LOC108280689,LOC108280734)


Basic Information

Item Value
gene id LOC113528094
gene name LOC108280689,LOC108280734
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1202428 ~ 1205204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916426.2
TCTTGCACATGTGTATAAATACTCCATGAAGAACTCAAGATTTAGGAGGTTCTAGAAGGTTCGTTTAGAAGACCCACATAGCGTGCACAGGTTATATCTGCTCATACACACATCGAGTACCAGAGGTCCTCAGCACTTCATAGTcctgtaatattatatatcataAGAACAGGACACACAACAAATCAAGCCATGCTGGTGATTTGGGCCATGCTTGCTGCAGCTCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATTTGTCTCAGTGTCGCAACGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCCTTGACATGAGCTCCTGGATCCAGAACAACTCCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGATTGGAGACCAAGTCGGAGGTGCAACATGAAGTTGTCCAGCTCCGTCTACCAGTCCAGCGAGGCCCTGGTCAGTGCCAGCACCTCCTCTATCAAGAACAACTGGAAGGTAGGCTTGCAAATAATTACTCCAAAAGTCCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCAAATATTCAATggacaaaaccaaaaaagaCAAGTTCAGCTTCACCAGCCATGCTGTCTCTTGTGGATATTATAGATACAGAGTTTCGAGCCGTGCACTCTTGCACCCTGAGCTAAGTAATGAATTTGAAAGTCTCCCTGCGACATACGATGAATCTACAAAGGACCTCTACTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTAAATCTGGGTGGAGAGGTTTACTCTGTGACCAGCATCAAGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGATGTGGAGGCTTCTGTCAGTATGGGAATAGCTGCAAAACTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAAGACAAGATTCTGAGCAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAAATGTGATTGGTGGCTACACTCAGAGTACTGACCTCCTTTTCTCATCAAGTAATGACCCAGAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAGCCCCTTCACGAGTTGCTGCCCGCGAAGAAACCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCCCATGCAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCGGGCGTGGCCCTCAACTGCTGCCCCAATCAGAGAGGATCTGCTCAAGTCACAGTAACTGCGATTAAAGCCACAGGTTTACATGGAGATTTCTTGGATGCGACAGATGCATTCGTGAAGATCCTCCTCAATGGTAAGATCAATGGAGGCCAGACATCTGTGATTCAGAATGACAACTCGCCCAGGTGGGACTGGGATTTCCATCTTGGAACTGTGGACCTTACTCATTTCAGCATTGTGAAGTTAGAGGTATGGGATGAggacagtaactcaaataatgaCCTTCTTGGGGAATGCAATGTTCAACTGAAATCTGGAGTTGAGGAAAATGTCTGTGCACTCAATCACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCATGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTGGAGAAAGCGTATGTCTCCCGGAACACTCACCCAATTCCCAGAGACATGCTGCTGGAGATGGGAGTGCTCCTTGATGAACGCATTCCCCGCTTCAACCAGAGCAACATTCGCAAAGTTAAAGGTCTTGAATTGTAGGCCAAATGTGTTCTTTGTACAACTAATACATATTCACACCAgctataataatgtttaaagtAGAATAGCTGCAAATAATATTGGCACATTATTGCTAAACCTTTCCTGCTCATTTGTGCTGCCTTTTGCCTTTTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916426.2 True 2085 mRNA 0.48 5 1202428 1205204

Neighbor

gene id symbol gene type direction distance location
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding downstream 8244 1190456 ~ 1194184 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding downstream 23630 1176398 ~ 1178798 (-)
LOC117598761 NA coding downstream 52389 1148595 ~ 1150039 (-)
LOC113528091 LOC108280723 coding downstream 54271 1143945 ~ 1148157 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding downstream 76336 1121166 ~ 1126092 (-)
LOC113528093 LOC108280723 coding upstream 2971 1208175 ~ 1216566 (-)
LOC113528234 NA coding upstream 63178 1268382 ~ 1279552 (-)
LOC113525779 NA coding upstream 77196 1282400 ~ 1294239 (-)
LOC113528189 NA coding upstream 97197 1302401 ~ 1306363 (-)
LOC113527946 LOC108280870,LOC103034911 coding upstream 104684 1309888 ~ 1316175 (-)
G203609 NA non-coding downstream 91116 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 158781 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 221413 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 245804 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 262085 939508 ~ 940343 (-)
G203630 NA non-coding upstream 32960 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 249983 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 293816 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 301997 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 320459 1525663 ~ 1528233 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 71878 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 135608 947730 ~ 1066820 (-)
G203544 NA other downstream 291200 910117 ~ 911228 (-)
LOC117598979 NA other downstream 448606 750063 ~ 753822 (-)
G203488 NA other downstream 451629 741244 ~ 750799 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 60458 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 785969 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 860684 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 907241 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1126472 2331676 ~ 2344912 (-)

Expression


Co-expression Network