LOC113528095 (LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734)


Basic Information

Item Value
gene id LOC113528095
gene name LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1190456 ~ 1194184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916428.2
AGATTCATTTTGAAGGCCCATTTAAAGTGCACAGGTTTTatctgctctcacacacatcaaGAACACACCGAAAGTCCAGCCATGCTTCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTTTTCCCTCCTACAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGACATGAGCTCCTGGATCCAGAACAACTCCTGTACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCAGAAGTGCAGCATGAAGTTGTCCAGCTCTCTCTATGAGTCCAGCGAGGCCCTGGTCAGTGCCAGCACCTCCTCTGTCGAGAACAACTGGAAGGTAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCAAATATTCAATggacaaaaccaaaaaagaCAAGTTCAGCTTCACCAGCCATGCTGTCTCTTGTGGATACTACGGATACAGAGTTTCGAGCCGTCCAGTCCTGCACCCTGAGCTAAATAATGAATTCGAAAGTCTCCCTAAGATATATCATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCATCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGTCAGTATGGGAATAGCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAACAGGCCAAGGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTCGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCACTCACCCTGATGTGCTTTCCTACTCGCTCGAGCCCCTTCACCAATTGCTGCCGGCAAAGAAATTACTCCGAGTTCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGTAGCTGCAGCTGCCACAACAACCCGGGCGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGCATTTGTCAAGATCCTCCTCAATGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCGGATAACAACTCGCCCACTTGGAACTGGGATTTCCATCTTGGAACTGTGGATGTAACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGATGAGGACGGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATAACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATTCCTGGTTTGGCTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTGGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGCATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAGTTGTGTTCTTTGCGCAGCTATTGCATATTCATGTCAGCTATCATAATGTTTAAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTCCTGCTCATTTGTGATGCCTTTTGCCTTTTTGAAAGCTTAGTAAATATCTCATGAAGCAAAA
>XM_034309711.1
TATAAATACCCCATGTAGAACTaaagaagaacatttaaaaGATTCTAAAAGATTCATTTTGAAGGCCCATTTAAAGTGCACAGGTTTTatctgctctcacacacatcaaGaaacaGAACACACCGAAAGTCCAGCCATGCTTCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTTTTCCCTCCTACAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTGGCAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGACATGAGCTCCTGGATCCAGAACAACTCCTGTACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCAGAAGTGCAGCATGAAGTTGTCCAGCTCTCTCTATGAGTCCAGCGAGGCCCTGGTCAGTGCCAGCACCTCCTCTGTCGAGAACAACTGGAAGGTAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCAAATATTCAATggacaaaaccaaaaaagaCAAGTTCAGCTTCACCAGCCATGCTGTCTCTTGTGGATACTACGGATACAGAGTTTCGAGCCGTCCAGTCCTGCACCCTGAGCTAAATAATGAATTCGAAAGTCTCCCTAAGATATATCATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCGTTCTGTGACCAGCATCAAGGAGTGCCAGGCATCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGTCAGTATGGGAATAGCTGCAAACCTGCAGACCGAGGCTCATCACTGCAAACAGGCCAAGGACAAGACTCTGAACAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTCGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCACTCACCCTGATGTGCTTTCCTACTCGCTCGAGCCCCTTCACCAATTGCTGCCGGCAAAGAAATTACTCCGAGTTCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGTAGCTGCAGCTGCCACAACAACCCGGGCGTGGCCCTCAACTGCTGCCCCACTCAGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGCATTTGTCAAGATCCTCCTCAATGGTAAAATCAACGGAGGCCAGACGTCTGTGATCCCGGATAACAACTCGCCCACTTGGAACTGGGATTTCCATCTTGGAACTGTGGATGTAACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGATGAGGACGGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATAACGGAGTGCTGTATTATAAAGTGCAGGTGAAGTGCATTCCTGGTTTGGCTGGTCCTTCGTGCACGGAGTACAATCCCTCTCCCATGGAGGCACAGCTGGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGCATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCACTTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAGTTGTGTTCTTTGCGCAGCTATTGCATATTCATGTCAGCTATCATAATGTTTAAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTCCTGCTCATTTGTGATGCCTTTTGCCTTTTTGAAAGCTTAGTAAATATCTCATGAAGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916428.2 False 2011 mRNA 0.49 5 1190456 1194135
XM_034309711.1 True 2066 mRNA 0.48 5 1190456 1194184

Neighbor

gene id symbol gene type direction distance location
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding downstream 11658 1176398 ~ 1178798 (-)
LOC117598761 NA coding downstream 40417 1148595 ~ 1150039 (-)
LOC113528091 LOC108280723 coding downstream 42299 1143945 ~ 1148157 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding downstream 64364 1121166 ~ 1126092 (-)
LOC113528610 LOC108280679 coding downstream 70725 1111509 ~ 1119731 (-)
LOC113528094 LOC108280689,LOC108280734 coding upstream 8244 1202428 ~ 1205204 (-)
LOC113528093 LOC108280723 coding upstream 13991 1208175 ~ 1216566 (-)
LOC113528234 NA coding upstream 74198 1268382 ~ 1279552 (-)
LOC113525779 NA coding upstream 88216 1282400 ~ 1294239 (-)
LOC113528189 NA coding upstream 108217 1302401 ~ 1306363 (-)
G203609 NA non-coding downstream 79144 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 146809 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 209441 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 233832 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 250113 939508 ~ 940343 (-)
G203630 NA non-coding upstream 43980 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 261003 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 304836 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 313017 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 331479 1525663 ~ 1528233 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 59906 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 123636 947730 ~ 1066820 (-)
G203544 NA other downstream 279228 910117 ~ 911228 (-)
LOC117598979 NA other downstream 436634 750063 ~ 753822 (-)
G203488 NA other downstream 439657 741244 ~ 750799 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 71478 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 796989 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 871704 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 918261 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1137492 2331676 ~ 2344912 (-)

Expression


Co-expression Network