abca3b (abca3,abca3b,LOC107742093)


Basic Information

Item Value
gene id abca3b
gene name abca3,abca3b,LOC107742093
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16691510 ~ 16736757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916431.2
TTTGTTGACGACTGTTGGTGTGTTGATCGCAGCCGGGCGCAATGTCATTCCTCCGGAGCCGATGTTTCCTAACGTAATGGCAGGGAAGGGATCTGTGTAACACAGCCCAGGCGCATGAACACCTCTCCGGATGACAAGCAGCACGTCGTTATTTCATGGTTTTATCTTGAAAGGAGGGATTTTTTACCGCCCCGGCCGAGACGCAGCTCATGAAGTTCATCTGTACAGGCCCTCTGTACGAAGGTTGTAAAGCAGTGGCTGTGAACTAAACATGGCTGTGTGGCGACAGTTTGGGCTACTTCTCTGGAAGAACTACCTACAGCAAAAGCGTCAGATCTTGGTGACATTGGTGGAGATCGCACTGCCCCTACTGTTCTCCGCCATCCTGATTGTACTGCGTCAGAAGGTGTCCTTTACCAACTACCCCAATGCCACGCATTACGATAGCTTCTTACTGGAAAGGCCTCCTGCTCATCTGCCCTCAGGCCTGCAGCTTGCCTATGTGCCGGCAAATTCCAGCATAGTACGCCAGGTGGCTGAAGACGTGCAGCTCAGCCTGGACCATGGCTTCATCAGTGCTGTGCGTGGGTTTGAGACTGAGCATCAGTTCGAAGAGTTCGTGAAGACAGACCCTGAATCAGCAAAGATCCTGGCAGCAGTGGTGTTTGAGCACTCCTTTACTCAGGATGATGAACCTCTCCCACTTCAGGTCAGTTATCACTTGCGCTTCTCGTATAATCCCCGAAATGCTCCTTCCAAGGAAAAATCAGAGCTGAATCCAAACAGTGATCTTAACTGGCACACTCTCAGCCTGTTCCCCCTCGTTCAGCTGCCTGGACCTCGAGAGCAGCATGATTCTCGTGGGGGCACTCCAGGTTATTACCGTGAGGGCTTCCTAATGGTCCAGCATGCAGTGGACCGAGCCATCATGAAGGCCTACAACAGGACAGCGGCGACTGCCCTCTTCACGCAGACATGGGTGGTGCTGTCACGCTTCCCGTACCCAGCTTTCATCTATGATGTCTTCATCCTGGCCATCCAGAACCAGCTGCCCCTCCTGCTGGTGCTCAGCTTCACCTACACGTCCCTCAACATTGTCCGAGCCATAGTGcaggagaaggaaagaaaactCAAGGAATACATGAGAATGATGGGTCTGAGCAACTGGCTGCACTGGAGTGCCTGGTTCCTCATgttcttccttttcctctctaTCTCCATTTTCTTTGTCACCTTGCTCTTCTGTGTCCAGGTGAGTCCAAATGGAGCAGTGCTGACCTATAGTGACCCTACACTAGTCTTCGTCTTCTTCCTTGCATTTGCCGTGGCTACTATCAGCTTCTGTTTCATGATCAGCTCCTTCTTCTCCAGAGctaACGttgcagcagcagcaagtggttTCCTGTACTTCTTTAGCTACCTGCCATACCTCTTCCTGTGGCCGCGTTATGACCTGCTATCCCACGCTCAGAAAGTGTCTGCCTGTCTCATCTCCAATGTGGCCATGGCTATGGGTGCCCAGCTTATTGGCATGTTTGAAGCCAAAGGCATGGGGATCCAGTGGAGTAATCTGTTTGAGCCTGTGACTGTGGATGATGACTTCTCACTGGCTCAGGTTCTTGGGCTCTTGCTGCTGGATGCCATACTCTACAGCCTGGTGGCTTGGTACATCGAGGCTGTCTTCCCTGGCGAGTATGGAGTGCCACGACCATGGTACTTTTTCATGCTGCCCTCATACTGGTGCAACAGTCCTAGAGTTGCCCTGTTGAAGGAgaagcaggaggaagaggatgcaGAGAAAGCGCTGAAGGGCGAGTTCATTGAAGAAGAGCCAACTGGATTAGTCTCAGGGGTCAAAATCAAGCACCTGGCCAAGGTTTTTAAAATGGGCAATAAGACCAAAGAAGCAGTGAAGGATctcacattaaacatgtttGAAGGCCAGATCACAGTGCTGCTAGGACACAACGGCGCTGGAAAGACCACCACACTGTCTATGCTGACTGgcTTGTTTCCTCCCAGCAGCGGCCGAGCTTACATCAATGGCTATGATATATGCCAGGATATGGCGCTGATCCGCCGCAGCCTAGGTCTGTGTCCACAACACGATGTGCTTTTCGACAACCTCACGGTCCGAGAGCATCTGCTTTTCTATGCCCAGCTGAAGGGCTACCCACGTGAAAAGATCCCAGATGAGGTGGACCGCATCATCCGTATCCTAAATCTGGAGGATAAGAAGAATGCACGGTCAAAGACCCTTTCAGGCGGAATGAAGCGCAAGCTTTCTATCGGAATTGCACTTATTGGAGACTCAAAGGTGGTTATGCTGGACGAGCCTACCTCTGGCATGGACCCATCAGCCAGGCGAGCCACATGGGATCTTTTGCAGGGCGAGAAACGAGGTCGCACCATCCTTCTCACCACGCATTTCATGGATGAAGCTGACCTACTGGGAGACCGCATTGCTATCATGGCTGGTGGGGAACTCCAGTGCTGTGGCTCACCTCTCTTCCTCAAAAACAAATACGGTGCTGGCTACCACATGGTGATAGTAAAAGACGCGTTGTGTAATGTATCCGAGATCAGCCGCCTGGTCCACATGTACGTGCCCAATGCCACCCTGGAGAGCAGCGCTGGGGCTGAACTTTCCTACATCCTGCCAAAAGAGAGCACCAGCAGGTTTGAGCTTCTGTTTGCGGAGCTGGAAATGAACAGAGAGGAGTTGGGCATCGCAAGCTATGGAGCATCTGTTACCACCATGGAGGAAGTTTTTCTTAGGGTCGGGAAGCTGGTGGACTCCAGTCTAGACATTCAGGCCATTCAGCTTCCAGCCCTGCAGTACCAGCATGAACGCAGGTCACATGACTGGACAGTTGATGATACTAGCAGTATCAGCGGCATGACTGATGTGACGGACTTCACTGATAGTGGCACATTGATCTCAGAGGACTGCTCCAACATCAAACTCAACACAGGGGCTAAGCTGTACATGCAGCAGTTCTACGCCATGTTCCTAAAGAGGGCACTGTATAGCTGGCGGAACTGGAAGGTGATGGTGGCACAATTTTTAGTGCCACTTATCTTCACAGCAGTCGCCCTTGTGGTGGCCCAAACTCTCCCTGGGCAACACAAAACCCCAGAACTTCCCCTAGCACTCAGCCGCTATGGCCCCACCACTGTGCCCATGGCCCTGGATTCTAATGCGGGACCCCTGGCTACAGCACTTGCTGAAGCCTACGCCGCCCAGCTTGCTGCCGAGAGTGCCACACCAGTGACCAATCTAACCGACTTCTCTGAGTATATACTGAACAATGCCATGAGGGAAGGAGGAGCCTTCAACGAGCGCTGTGTGGTGGGTGCTGCTTTTCATGGCCGAACGAACAGgtttgctgaaatcactggctACTTCAACAACCAAGGCTACCACACACCGGCTACTGCGCTTATGCTGGTGGATAATGCACTGTACAGGCTCTTGGCTGGCCCCAACGCTTCCATCCAGACAGGAAACTATCCCATGCCCCGCAACATGTCCGAGACAGCCCAGAGCCAGCTGTCAGAGGGTCAGACTGGCTTTGCCATAGCCATTAACCTGATGTATGGAATGGCATCCTTGGCCAGCACCTTTGCCCTGCTCCTGGTAATTGAGCGCTCTGTGAAGTCCAAGCACGTACAGCGGGTCAGCGGCGTCTACCTCTCCAACTTCTGGTTCTCTGCATTACTCTGGGACCTGATCAACTTTGCATTGCCTTGTCTTCTAATGCTGgTGGTGTTCCGTGCGTTTGGGGTGAAGGCCTTTGTTGAGGAAAATCACTTGGTAGATGTGCTGCTTTTGTTGCTGCTCTATGGCTGGGCTGTGATTCCACTCATGTACCTGCTCAGCTTCCTGTTCTCTAGCGCTGCCACTGCTTACACACGCCTCACCATCTTCAACATCATCAGCGGCACAGCCACCTTCCTTGCCGTCACCATCATGACCATCCCTGAGTTGGAGCTGCAGAATCTTTCACGTCTACTGGATAAAGTATTCCTGCTATTCCCCAACTACTGCCTGGGCATGTCTTTTAGCCAATTCTACCAAAACTACGAGACCATCAGCTTCTGCACCACCAGCTTCCTCACTAAAGAAATCTGCCAGTTTTACAACATCACCTATCAGCTGAACTACTTCTCTATGAATGAACCCGGAGTGGGCTGCTACCTGGTGGCCATGTCCCTGCAAGGTGTAGTTTTCCTCATCCTTCTCTTCGTCATGGAGCTCCAGTGCGTcaacacactcttcaccctctgCAGGAGAAGCAAGAAGGGCATGCTGGTTGGAGAAGAAGCCCTTCAACCTGAGGATAGAGACGTCGCTGATGAGAGAAAGAGGGTTTTGGATTGCCAGCCTGTGGTGGAGTCCATGGTGGGCAGTCCTCTTATTCTGCAAGAACTTACTAAGGTGTACCCAGGGAGTCAGTCTCTGCTGGCAGTCGACCGTTTGTCCCTGGCTGTGGGGAAGGGTGAATGCTTTGGCCTACTAGGTTTTAATGGAGCAGGAAAGACgactacatttaaaatgctgACTGGAGACGAGACTGTGACTGCAGGGGATGCCTTCATCGATGGCTACAGTATTCTTCGTGATGTAAAGAAGGTACAGCAGCGAATTGGCTACTGCCCTCAGTTTGATGCTGTGCTCGATCACATGACTGGCCGAGAGACTCTCAGCATGTACGCAAGGCTCAGAGGAATCCCAGAGAAatatgtgtttgcatgtgtggaGAATGTGCTCCGCTCATTGCTCCTGGAGCCGCACGCAGACAAACTGGTCCGCAGTTACAGTGGGGGCAACAAGAGGAAGCTGAGTGCAGGTATGGCTCTGATTGGTGGGCCACCTGTCATCTTTCTGGATGAGCCATCCACTGGCATGGACCCTGTGGCCAGACGCTTGCTCTGGGATGCAGTCACCCGCACCAGAGAATCTGGCAAAGCCATTATTATCACCTCACACAGtatggaGGAGTGTGAGGCTTTGTGCACTAGACTGGCCGTGATGGTCAATGGGCAGTTCAAGTGTCTGGGCAGCCcacagcatctaaagagcaaaTTTGGCAGTGGATACACACTGTTGGCCAAAATCCACATGGAAGCTGATTTAGAGGAGATGGACCTTCAGCTCTTTAAAGACTTCATCGAGAGCACCTTCCCTGGTAGCTTATTGAAGGATGAACACCAGGGAATGGTACATTATCACTTGACTGACAAAACATTAACCTGGGCTCAGGTTTTTGGGACCCTTGAGGCAGCTAAGGAGAAATATAGCATTGAGGACTATTGTGTGAGTCAGATCTCACTAGAGCAAGTTTTCCTGAGCTTTGCTCAGTTCCAGCACTGTTCAGAAGGCTGGAGAAAatcagactgagaaaaagagagatgaagacTCCTGTAATTTTCCTTATTTAAAGCCTTTATGTGGTGCAACTTGGGCTGAGAGATTTTTCTCCACATGTTCAGGTCTCAGAaaatttctttctcttccccatacaccaacacacaggtGTACTGCACTGGTACTGTACTTCACTAATCACAGATCTTGGACAGTACTTTGGAGGTCTGGACTAAGCATGTATAGTGtgttaaaactgtgtgtgtgtgtgtgtgtgtggcagacaTTGCAAGCAGTGTGTTTGGGGGGAGAGGTTTTCATCCACACCAAGTAAAGCAGAACTTAATGTGTTGCATTTTAAAGTCTTTGCATCAGTTGTTGTTGCTGGAAACTCTTTCTGAATGATGATTGTCTGTGATGGTCTGGATTATGTGTAAATGTCTACAAATGTATGAAGCTGTACTGCAAAAAATAGTCACCTTAAAGAatcaaaataaatctataaacaaTGCCATGCCATCCCTATCTCTAAAAGCAAACACATGCAGCTATATTGcaatacattaattttttttggtttttgtacttttttctgtttttacattacaaaaacaatatttGCACTGGAAACCTTCCTCCAAAGAATTAGTCAGTTTAACATGTTTGAAATAGTTTTACCTCCCTGGCTTACagatggaaaaaacaaacaaacagtataTGTTACTTATTGCCAATTTACACTGATACTgtcttgttttgtgtttcttgAAAATATagcacatacactatatggccaaaagtatgtggatacctgaccatcacacccatgtgtgcttactgaacatcccattccaaagtaggttcccctttgctgttataataacctccactcttctgggaaggctttccactagattttggaatgtgtctgtggggatttgttcCGTTTGGCCAGTAGACCGTTAgagaggcctggtgtgcagtcagtgttccagttcatcccaaaagtgttcagtggggttgaggtcagggctctgtgcagaccactcgagttcttccacactaaCGTAGGCAAGCCATGTCTTTCAGACATGACAGTTCAGACAGTGTGCTTTCAGCTTtgtgcaacagtttggggaagaaccatatatgggtgtgatggtcaggtgtccacaaacatttggccatagaGAATAGTATGACAGGAAACCAAAAATGTACTAGAATATTCTAATATCTGAAATAATGGATTTAAGTACCTTCACATGACCACAGTCAAAATATATGCTGCTTCAGGTGTTCAGGCTGTATGTGTTAAATTCTCATCAGAGTACTAGTAAAACACCATCTGAGTTGTGACTCAATCTGTGCAGACAGGTTGCAAAATTTTtcaattcaaatgtcaaactCTCTTAACTGACATAGTACATGTAAGCTTTTTTGTATGTTGTGTAAAGAATGGTCCCTGGTTATCCTATTCATTATCGATTCCAAAGGAAAAGTGACAGTACTGTGTTGTATGTGCGTACCCCATTTGTAAATGGATCTTTTAATTTACACCTATGCTTTATTTAACCGTCCTGGACAAAAAATCTGCAGTACTGATCCAGGTCAATTCATTTACCcagtccatttttaaaaatgatgtcagtcttcaaaaaaaaaaaaaaaaaaaggactaa

Function

symbol description
abca3b Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in swim bladder. Human ortholog(s) of this gene implicated in pulmonary alveolar proteinosis. Orthologous to human ABCA3 (ATP binding cassette subfamily A member 3).
abca3 Enables ABC-type xenobiotic transporter activity; phosphatidylcholine flippase activity; and phosphatidylcholine transfer activity. Involved in several processes, including drug export; drug transmembrane transport; and positive regulation of lipid transport. Located in alveolar lamellar body membrane; late endosome; and plasma membrane. Implicated in pulmonary alveolar proteinosis.

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 3-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05643 ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916431.2 True 7053 mRNA 0.49 31 16691510 16736757

Neighbor

gene id symbol gene type direction distance location
LOC117595684 NA coding downstream 2911 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding downstream 13676 16671145 ~ 16677834 (-)
LOC113528041 LOC108276772 coding downstream 56773 16615091 ~ 16634737 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding downstream 145870 16538381 ~ 16545640 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding downstream 154256 16501121 ~ 16537254 (-)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 1184 16737941 ~ 16752068 (-)
LOC113527928 LOC108259859 coding upstream 33541 16770298 ~ 16779653 (-)
dnaja3a dnaja3,LOC108431932 coding upstream 83483 16820240 ~ 16829084 (-)
vasnb LOC108276517 coding upstream 173156 16909913 ~ 16931628 (-)
glis2b LOC108276531 coding upstream 237964 16974721 ~ 17038944 (-)
G212395 NA non-coding downstream 1173 16681184 ~ 16690337 (-)
G212319 NA non-coding downstream 194278 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 235663 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 651111 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 654193 16037116 ~ 16037317 (-)
G212463 NA non-coding upstream 95211 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 441771 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 547743 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 555603 17292360 ~ 17292723 (-)
G212654 NA non-coding upstream 603830 17340587 ~ 17342051 (-)
LOC113528039 LOC108276772 other downstream 92822 16572545 ~ 16598688 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 487519 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1705398 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 2001378 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2170535 14520277 ~ 14520975 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 24475 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 556016 17292773 ~ 17319719 (-)
G212700 NA other upstream 649454 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 653429 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 938070 17674827 ~ 17675284 (-)

Expression


Co-expression Network