LOC113528102 (rnf222)


Basic Information

Item Value
gene id LOC113528102
gene name rnf222
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11493275 ~ 11495487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916453.2
TTGATTCTGAGAACAGTCCCACAGCTGAGGTTAAAATCCGTACAGCAAACTTTTCATTGGCTACACGCAAAAATGACATCGATACCGGCAGATTGTCTTTCTCGGTTCTGCAGCCCTTCCAGTTCGACAACATTTTGCCCACATGCTAGTGAGTCATTAATGGCGCATTTACGCAACATCTGTCGAAGAGCAACTACTTCCAGCTAAGTTAGTGTTCCTCCTGTGGAGACGTGAAGAGAGCATGCGGATCTGACTgtaaacatttgtgtgtgtctctgtgtgtgtgatgatggatgAGGAAGCGTACAACGCGGAGTGTCCAGTCTGCTATGAGGGGTTCGCAGACGCGGCTCGCACGCTGAGTTGCGGACACGCGTTTTGCCATGACTGTCTGGTCGGGACTTTTGTGGGATCAAACAGGGACGGAGTTATCACCAGAGACACCATCATCTGTCCCGTGTGCAGACATGTCACATTCGTTACCAGACTGCAGGGACTCGGcggaaggaaggaaaaacacGCGAAGATGTTGGAGGTGCCGCTGAGGTTCTCTGGGCGCTCCACATCTGCTCCGAGATCCAGCGGCGGACGGTGTCGGCGGCTGGGACGCTGCTTGAGGTGGATTTCGTCCAGAATGAGCCGCCAGAGGCTGGTGTATCCTAAAGACTCCTCGCAGGTGTTCATCATAAGCGATCTGGGACGCCCTTTGGCTGAGGAAGACATTATTGATGTTGGGCCAAGTACGGTGATTCGTGAGAACAGCACTTATGATGGCTGTACACTGTGCACAACGTCACACTGCCTGCtgtttcttttaataattttcacTTTACTGGCTTTGATAGCCGCAACACTGCCTTGGGTTTTTCTGGCATAAGGATCATTGCGTTTTGGAGACCTTACTTTATTCTCTTATGATGGCATGTATGCTATGAGAGGTCAACGGATGATTACTGCACAATCTTTAATCAAGTATCTGTTTATCAATTATTGACATTGGATTATTTTCTGACACGCTTCAAGAAATACAGAGATCAGAGCGGATGTGAACTACCAccacatttcatttcaccagcttattttgtaattattttgtaaCTCCTGGTATACCTAACACAGGACACAATGGGCTGCTTTGTCACCAAAGAACTGCTGATCCCAAGCTGATGAAAAACCACTGAGTTGTGCTGAGTTGTACCTTGAGCTCCTCTGCtactaaattattaatatgaaaaaggAGCAAGGTGAGCAAAAGAAGACAAGCCTGGCAGGCAGGTTGTTACTTTGTAAGGGGAGATGTTTATTGGATAAAGTTTCATCTTTTTTCAAATGTAGGGATTCTGAGAAGGTGTAAGTGTGCCTTGGTACTGCTTGCATGCCTTCTTTTAAGACACACCCTTGTCCTTCAAGCACTTCTTGTCACACAGGTtagaaaattacatttcttttccttcatGGCTTGCCATGGACTCTTTCTATGGtatattgctttttatttgagatctcagtaacatttacaaatgccCTTTATAAGCAACATATAATCTTTGAAAAAACAGCatctatattttaataataaaaaaaaaaacagtcagaccagaaatattaaaaatgtagagTTTAATATAGATATCTATATCTGACATTCTGATCAGGATTGCGGTAGGCTTCACAGTACAGACTGTGTTGTTCCACTGATATGCTAAGCTGAGGGGATAGGAGGGGGAGGGAGGGGAGTGACATACAGGCAAAGTTTGTACAGAAGTTGTGAATGCAGGGGAGAGGCTGTACATCAATGGACACTGTGCACTTATACATAAATCCATGACACTTCTTTAACCAGCTGTTCACACACTTGCTATTTTTCACCATCTCCCCAGTTTACTGATAACATTTAAGAGTCttaaaagaaatcaaagaaacAGGAATCATGAATTATCTGAAGAGACTAAGTGCATGCATTGCATTGTTACATCCATTTTCTGCAATGTCAACCGAAAGCTTTCGGGGGTACAAACATATGATGGTTATATATGTTATGCATGTCTGGCTCTTGTCtcttgtgtcattttttttttaatttaattcattgaAGTACAATATAACTGAACTAAGGACCTGTGACACATGAATGTGGTGAACCTAACCTTGCACAGCAGCACCTGAATTCACAAATAAGCTATTTTCCTTAATAAAGAAGGAATGcagataaa

Function

symbol description
rnf222 Predicted to enable metal ion binding activity. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916453.2 True 2213 mRNA 0.43 1 11493275 11495487

Neighbor

gene id symbol gene type direction distance location
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding downstream 54940 11426285 ~ 11438335 (-)
LOC113528663 NA coding downstream 60647 11432510 ~ 11432628 (-)
ttyh2l LOC108277373,LOC108432236 coding downstream 301760 11154915 ~ 11191515 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding downstream 341112 11147394 ~ 11152163 (-)
baiap2a LOC108277336,LOC108432239,LOC107711237,LOC107672452,LOC107670476 coding downstream 347443 11074517 ~ 11145832 (-)
LOC113528402 LOC108258929 coding upstream 14244 11509731 ~ 11518087 (-)
slc16a5b LOC108274816 coding upstream 25279 11520766 ~ 11529442 (-)
LOC113528647 NA coding upstream 41073 11536560 ~ 11536678 (-)
LOC113528658 NA coding upstream 70523 11566010 ~ 11566128 (-)
spc24 spc24 coding upstream 250004 11745491 ~ 11751424 (-)
G209541 LOC108256081 non-coding downstream 16479 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 91852 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 104044 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 271897 11218659 ~ 11221378 (-)
G209189 NA non-coding downstream 348291 11089013 ~ 11144984 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding upstream 36089 11531576 ~ 11535697 (-)
G209618 NA non-coding upstream 104985 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 115147 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 124053 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 168998 11664485 ~ 11665129 (-)
tecpr1b LOC108276900 other downstream 1022757 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1760709 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2018797 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2073691 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2289635 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 146670 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 204362 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 802289 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 838367 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1050846 12546333 ~ 12559213 (-)

Expression


Co-expression Network