fam117aa (fam117a,LOC108413398,LOC101073443)


Basic Information

Item Value
gene id fam117aa
gene name fam117a,LOC108413398,LOC101073443
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8729965 ~ 8745043 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916458.2
TGGAGGCTGGCTGTTGTCAGATATTGGAGTGAAGAGAACTTTGGCAGTCAACCAACAATGTAGACGACTCGAGAAACTTTAACCATTTTTACGACCAGGTCTGCGTGTATACACTCGTGTAACAGTCGATTTGGTCATGTTGGATTAGTTACAGACGGATATTCCTTAAAAGGTAGTAACGAGGttgcttcattttttaataacaattaaaaaaagttttgcagGCTTAGCTGTAATCACAAAAGAGTTAGCTGGGTGTTAGCTAAGCATTAAGTGAGCTAGCATTAACGGCACAGATATCTCCAGAGATAGGTCAGATTTGTATGGAAACACTTTAGGAGTCGATAGTTGAAGCAACCTCGGAGTTAAAAACTGGAAAATTTGGAGTTTTGGTGAACAAACTGACAGAAATAGTcgcctctcttcctcctcctcctcctcctcttcctcctcgtcctcctccttgTGAGCTCGCGAGCTCGGGATGTCGTCTCGCGGCGGTCTGCAGCCTCTCCGAGCTACAGTTCCCTTTCAGCtacacaacaacaccaccagcaccagcaccacgAAAAACCCagcacagagatggagagagccCAAACCGGTTGAGTCCAAGACAAAGGCTCGTCCCCCGAAGCCGACGCTGAGACGGACACTTTCCTTGGACACGTTAGTGGGGCCGTACCTGCAGGGCCAGTGGCCCAAACAGCCCGAGAGCCAGACTGTAACCTGTGTCAATGACAAAGCCACACAGACCCCCAGTTCGTGGACTGAGGAAACACGGGGGAGAAGAGGTGGAGTGGGGCACAAGCGCTCGGCATCATGGGGCAGCGCCGAGCACCTCAGAGagGTTGCTAAGCTGAGGCATTCACTACAAAAGCGCTCCAGACATGCACCTCCTCCTGCTGGCTATGAGCGCCTTCATCAGCCCTCGCCTACTATCCATACACACATGCCTGGAGCCACACAgACCATCCCTCTGCTGCCTCTAAGCAGGCTGGCTCCCAGACTGCGGCGCAGTGTAGAGGGGCTTAACCTGGAGCTGGAGGGGGTCTTTGTGTCTGAAACAGCAGAAGAACAGCACAAGATTCTGGATGTGCCAGATGGTCACAGAGCACCTGTTCCAGTGCAGAGATGCAGCAGCGGCTCTCAGAGTGACCTTTCCCCTGGTCTCCTCTCCCCGTCACAGTCACCCTGCCCTATAGAAGAGTCCGGTATGGTAGTGTGTGGGCCACTGGATCCCTCTCCTTCGCCTCCTTTATATGTGATTGACGCACCATCCTCGTCCCCCCTCCCCAACAAGACTTACGCCTTCCAGAGAGAGCCTCCAGAAGGCTGTgagagagtgcgtgtgtgtgaggaagccttTTCTCCATGCCATGGTGATCCCCCAGCTCAGCCTTCCTGCCCCGACCCCAACAAAGTGAACTTCACTCCTCATGGAGGCTCGGCCTTCTGCCCTGTCAGTCTTCTGAAGCCCCTTCTCCCTTCCATGGACTTGCTGTTTCGTGGCCTGTCAGTCTCACCTGTGACTGGCTGCTTGGGCCAAACCCCCGCCCCCTGTCCGACAACAGCACATCCAGTGAGTGGATACCTGAGTGGGCCCCTCCCAGACTCTACCACCTCctccatttaaaaatatgtgggACATGAGATGGCAAAAAGGAGGAAGTGGTAAACAAAAGAGCAACGGACTGAGGTTTTGTGTCATCTCATCATAGAACTGACCAAGTAATGGCTTACCAGTAGTTGTAGCAAGCACTAAGTGTTTACTTTTAGACTAAATCAGGAGATCACTGAGAACAGGAAAGACAAACTCTCGCCAAAAGACAGTAGGAAGAACTGTCACACTCAGGACAAACCCTCAAATTTCATTTGTGAACAGACTTCAAACCTCATGGGAAGGTACCAAATGTGTATGCAATACTGAATATTCTTTGTTCTATCTTGGTTGAAATAATGGCTCGTTTCCTTAAGCTGCTTTTAAATAAGGCTTAGTGGATATTGAACCTGCACTTACAGAGCATACAGAGACTCCTAGTGATGTCAGCCTTGATTCAAAGGAAAAGACATTACGCCCCACATAATAACTTTTCTAATACAGATATTGTTTTGCTCCACTTGGCCCTTTTGTACTCGACTGTGGAGTAGACGACTGACAAGATCCCCACAATgggttcatttatttcagtctactaaatttattttttacaccacAGAGCTGACAAtcctattatttattattcaaagtCACTCTCGACCTTTTCAGCTTCACAGTTTTCAGTTAGCAGCGACGTGAACTATGTCAACATAAACCTGTATGGAGTTGACCAGTTAGGTTTACGTTCACTAAATGATGTTGAAATCTTTTGTTGGAGCATTCACAATGATTTatgagcaatttttttaaaacacgaGTATACAAGAACATCTTTGATATTATCCAGAAAGAGCTGACATACATGgatttgaattaaaatgtttctacGTAGTATtcacctgaaaaacaaaacaaaacaaaaaaatctaaatactTTCATTCAAAAGTATTGAAAGTAGAAAAAGGCACTGATTTCTTGCATAATAccttgtattttttaaactgtatttttgaTATTCAGAAAGAattttttctttggtttgtaTATTTTCCAGTTATGAAAAAGACTGAACTCTTGTGCATTTATCAAGATAAATATCTACATTAGAATGTAGCAAGTACAAGTGTGTTTGTATTATAGCACTAAACACATTCAGCTTTGTTTTCAATACACAGTATGTTaga

Function

symbol description
fam117a Orthologous to human FAM117A (family with sequence similarity 117 member A).

NR:

description
PREDICTED: protein FAM117A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916458.2 True 2785 mRNA 0.46 8 8729965 8745043

Neighbor

gene id symbol gene type direction distance location
slc35b1 slc35b1,LOC107590797,LOC107684645 coding downstream 1367 8716324 ~ 8728598 (-)
spop spop,LOC107754841,LOC100710366 coding downstream 69844 8566771 ~ 8660121 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 481176 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 493343 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 520189 8204060 ~ 8209776 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 2666 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 19636 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 38356 8783399 ~ 8793415 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding upstream 50477 8795520 ~ 8802855 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding upstream 60199 8805242 ~ 8808981 (-)
G208016 NA non-coding downstream 80602 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 195253 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 236924 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 297704 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 371891 8353710 ~ 8358074 (-)
G208062 NA non-coding upstream 115520 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 126933 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 210399 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 210823 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 212218 8957261 ~ 8958211 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 16647 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 440157 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 445373 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 462327 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1024473 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 367923 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 451453 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 664761 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 719288 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 984808 9729851 ~ 9732566 (-)

Expression


Co-expression Network