slc35b1 (slc35b1,LOC107590797,LOC107684645)


Basic Information

Item Value
gene id slc35b1
gene name slc35b1,LOC107590797,LOC107684645
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8716324 ~ 8728598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916460.2
TCTGGGTTTGGGAGTACACTGCTGTAAGCTTGCAGAGGATCAGGCGCATCCAGCAGGCTCCTGACGGTCGCTTTGGTCCTACAGGTCTGACGCGTTAAACATCAAAACATCAGAGAGTCAAATGAGCCGCTAGACCTCATAAACGGGAGGGCGGCGGTTTATTATTTCCAACCTCGGGACTTTTTTGGACAACTTTTCCTGGCTGATATAAAATCAGTTTAACGCACCGGGTTGCGTTTCCGAGATGCTGCGGGAAACATGACCAGAAATGTGTTATAGGACCCAGCTGACTCTCTGACACATCCTCGGTTTTGTCCTGAGAGCCAGGTGGAAACGGAGAGAGGTGTATAAACCCCTTTAACACGCTCCTCAGCGGGGTACTGTAGCGCGTCACCATTTCCGGGCTCGTGCCAGCCGGTAGAGTGGAGCGGGACGCGGGCTCGAGTTCGGGCTCGGGCTCGGGCTCGGGGCTGGGGTCGGGGTCTGTGTCGGTGTCCATAGCCGGATTAACGCTACTGAACGACAGCATGGTTGCGGGAAAAGGCGGCGTGAAAGCGTCGCTGTGGCAGAACGAGAGAGTGCGCTTCCTCGTCTGCTTTCTCGGAGTGTTCGTGTGTTACTTTTATTACGGAATTCTCCAGGAGACTATCACACGAGGAGACTACGGTCAGggggagaaaaaggagaagttTCGCTATGCCACTACCCTTGTGTTCATCCAGTGTATCATCAATGCTCTTTTTGCCCGACTCTTGATCCAGTTTTTCGAGGGTTCCAGGCCAGACCACACGCGGAGCTGGCTCTATGCAGTGTGTGCTCTGTCCTATCTGGGAGCCATGGTGTCCAGTAACTCTGCTCTGCAGTATGTCAACTACCCCACCCAGgTTTTAGGGAAATCATGTAAACCTATCCCAGTCATGATCCTCGGTGTGACCATTCTGAGGAAGAAGTATCCCATGGCCAAGTACCTGTGTGTGCTTCTGATCGTCACTGGTGTGGCACTTTTCCTTTACAAACCCAACAAAGGCTCCACCTCCTCAGACGAACATGTGTTTGGCTTTGGAGAGATGCTGCTGCTCCTCTCTCTGACTCTGGACGGCCTGACGGGTGTAGCTCAGGATCACATGAGGGGGCGTTACCAGACAGGAGCCAATCACATGATGCTGAACGTGAATCTGTGGTCAACATTCATGTTGGGTTCGGCTGTGTTGTGGACAGGCGAGGTGTGGGAGTTTTTAAGCTTTGCTGATCGCTACCCCAGTGTTATCTACAACATTTTGCTCTTTGGTTTCACCAGCGCTCTGGGACAGACCTTCATCTTTATGACGGTTGTGTATTTTGGGCCCCTCACCTGCTCCATCGTCACGACAACAAGGAAGTTCTTCACCATCCTGGGCTCTGTGCTGTTGTTTGGGAACGTCATCACGTCCTTGCAGTGGCTTGGAACCATCCTCGTTTTCCTGGGTCTCGGCTTGGACGCCAAGTTTGGAAAGACGTCCAAGAAGACAACACATTAAAGCACAAAGAGAATACGTGTGTAAGCGTGTGCGATACTCACGGACAGAAAACTTGAAGAAACATCTGTTTCTATTGGTGCACTACTCCATCAGTGGCtaatctgaaaaacaaaatgtacttattttttatgcttttcCACCCATGAATCACTGAAAGAGTGGTCATATATTAACTTAAAAAGCAAAGACTGGATAGTGATAGAGAATTTTAGTTTCGTTTTTCTAGTCAAAATACCACACACTTCTACTTTGAACTATACTTCCCAGGGAGTTTAGAGCCAGAGGACAGTGAGCATGATAAGAATAATTTGCACGCTCATGGTATGCATGTGCACCAGCTCAGATTGGCCAGTTATACACAGACAACTCCATGTGTTAGTGTCAGTTTTACTCTGAATCACATGCCTCTTTTGtggttcatttgtttttaaatgtataatgtacattcatgagtgtgtgtataattataCATGTGTTCTGTCACTCCATCTGAGACTTACATCTTTAATGTTCACCCTGGCCACTGGATCTAAGCCACATCAGATTTACTCTGATGTACAACGTACATTCTTTCAtgtaaaacatgacatttttcttatatttgtgTTCCTGTCGAGTGTCTTGTTTACTGTATGAGGAAATGATCATTGTCTCTTCCATACAATAACGGAATAATTAGAATTCGAAAATAATTAGTTTTGGTATCTTTTTTGACCAGTTGGAACTGTATTGGATATTTAACTAAAAGGGAAACTCAGCCAGACTATCGGGGGTGTGTGATGACCAGCTGTTGTATGTGAACGTTGTGTTTGAGTCTGCCAACGAAGCCGTGTTGTCCGTCTGTCCATCGAGGGGGAAAAATCCAACCAGATGGCATTAAACTTATTTTGGACATGAATAAA
>XM_034309971.1
TCTGGGTTTGGGAGTACACTGCTGTAAGCTTGCAGAGGATCAGGCGCATCCAGCAGGCTCCTGACGGTCGCTTTGGTCCTACAGGTCTGACGCGTTAAACATCAAAACATCAGAGAGTCAAATGAGCCGCTAGACCTCATAAACGGGAGGGCGGCGGTTTATTATTTCCAACCTCGGGACTTTTTTGGACAACTTTTCCTGGCTGATATAAAATCAGTTTAACGCACCGGGTTGCGTTTCCGAGATGCTGCGGGAAACATGACCAGAAATGTGTTATAGGACCCAGCTGACTCTCTGACACATCCTCGGTTTTGTCCTGAGAGCCAGGTGGAAACGGAGAGAGGTGTATAAACCCCTTTAACACGCTCCTCAGCGGGGTACTGTAGCGCGTCACCATTTCCGGGCTCGTGCCAGCCGGTAGAGTGGAGCGGGACGCGGGCTCGAGTTCGGGGTCTGTGTCGGTGTCCATAGCCGGATTAACGCTACTGAACGACAGCATGGTTGCGGGAAAAGGCGGCGTGAAAGCGTCGCTGTGGCAGAACGAGAGAGTGCGCTTCCTCGTCTGCTTTCTCGGAGTGTTCGTGTGTTACTTTTATTACGGAATTCTCCAGGAGACTATCACACGAGGAGACTACGGTCAGggggagaaaaaggagaagttTCGCTATGCCACTACCCTTGTGTTCATCCAGTGTATCATCAATGCTCTTTTTGCCCGACTCTTGATCCAGTTTTTCGAGGGTTCCAGGCCAGACCACACGCGGAGCTGGCTCTATGCAGTGTGTGCTCTGTCCTATCTGGGAGCCATGGTGTCCAGTAACTCTGCTCTGCAGTATGTCAACTACCCCACCCAGgTTTTAGGGAAATCATGTAAACCTATCCCAGTCATGATCCTCGGTGTGACCATTCTGAGGAAGAAGTATCCCATGGCCAAGTACCTGTGTGTGCTTCTGATCGTCACTGGTGTGGCACTTTTCCTTTACAAACCCAACAAAGGCTCCACCTCCTCAGACGAACATGTGTTTGGCTTTGGAGAGATGCTGCTGCTCCTCTCTCTGACTCTGGACGGCCTGACGGGTGTAGCTCAGGATCACATGAGGGGGCGTTACCAGACAGGAGCCAATCACATGATGCTGAACGTGAATCTGTGGTCAACATTCATGTTGGGTTCGGCTGTGTTGTGGACAGGCGAGGTGTGGGAGTTTTTAAGCTTTGCTGATCGCTACCCCAGTGTTATCTACAACATTTTGCTCTTTGGTTTCACCAGCGCTCTGGGACAGACCTTCATCTTTATGACGGTTGTGTATTTTGGGCCCCTCACCTGCTCCATCGTCACGACAACAAGGAAGTTCTTCACCATCCTGGGCTCTGTGCTGTTGTTTGGGAACGTCATCACGTCCTTGCAGTGGCTTGGAACCATCCTCGTTTTCCTGGGTCTCGGCTTGGACGCCAAGTTTGGAAAGACGTCCAAGAAGACAACACATTAAAGCACAAAGAGAATACGTGTGTAAGCGTGTGCGATACTCACGGACAGAAAACTTGAAGAAACATCTGTTTCTATTGGTGCACTACTCCATCAGTGGCtaatctgaaaaacaaaatgtacttattttttatgcttttcCACCCATGAATCACTGAAAGAGTGGTCATATATTAACTTAAAAAGCAAAGACTGGATAGTGATAGAGAATTTTAGTTTCGTTTTTCTAGTCAAAATACCACACACTTCTACTTTGAACTATACTTCCCAGGGAGTTTAGAGCCAGAGGACAGTGAGCATGATAAGAATAATTTGCACGCTCATGGTATGCATGTGCACCAGCTCAGATTGGCCAGTTATACACAGACAACTCCATGTGTTAGTGTCAGTTTTACTCTGAATCACATGCCTCTTTTGtggttcatttgtttttaaatgtataatgtacattcatgagtgtgtgtataattataCATGTGTTCTGTCACTCCATCTGAGACTTACATCTTTAATGTTCACCCTGGCCACTGGATCTAAGCCACATCAGATTTACTCTGATGTACAACGTACATTCTTTCAtgtaaaacatgacatttttcttatatttgtgTTCCTGTCGAGTGTCTTGTTTACTGTATGAGGAAATGATCATTGTCTCTTCCATACAATAACGGAATAATTAGAATTCGAAAATAATTAGTTTTGGTATCTTTTTTGACCAGTTGGAACTGTATTGGATATTTAACTAAAAGGGAAACTCAGCCAGACTATCGGGGGTGTGTGATGACCAGCTGTTGTATGTGAACGTTGTGTTTGAGTCTGCCAACGAAGCCGTGTTGTCCGTCTGTCCATCGAGGGGGAAAAATCCAACCAGATGGCATTAAACTTATTTTGGACATGAATAAA

Function

symbol description
slc35b1 Predicted to enable UDP-galactose transmembrane transporter activity and UDP-glucose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Is expressed in hatching gland; notochord; and polster. Orthologous to human SLC35B1 (solute carrier family 35 member B1).

NR:

description
PREDICTED: solute carrier family 35 member B1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916460.2 True 2419 mRNA 0.47 9 8716324 8728598
XM_034309971.1 False 2389 mRNA 0.46 10 8716324 8728598

Neighbor

gene id symbol gene type direction distance location
spop spop,LOC107754841,LOC100710366 coding downstream 56203 8566771 ~ 8660121 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding downstream 467535 8238150 ~ 8248789 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding downstream 479702 8226297 ~ 8236622 (-)
si:busm1-163l24.3 LOC108276929 coding downstream 506548 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 512971 8201765 ~ 8203353 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 1367 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 19111 8747709 ~ 8762587 (-)
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding upstream 36081 8764679 ~ 8779068 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding upstream 54801 8783399 ~ 8793415 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding upstream 66922 8795520 ~ 8802855 (-)
G208016 NA non-coding downstream 66961 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 181612 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 223283 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 284063 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 358250 8353710 ~ 8358074 (-)
G208062 NA non-coding upstream 131965 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 143378 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 226844 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 227268 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 228663 8957261 ~ 8958211 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 3006 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 426516 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 431732 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 448686 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1010832 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 384368 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 467898 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 681206 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 735733 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 1001253 9729851 ~ 9732566 (-)

Expression


Co-expression Network