atxn7l3 (atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928)


Basic Information

Item Value
gene id atxn7l3
gene name atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8226297 ~ 8236622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916461.2
ATGATCGGTAGTTGATTAGTGATGTCTTGCGTCTGTCAAAATGGCTGcgctttattatttttccatatttaaatattcagcgGCTTTTTCATCTGTATATTAGATAGTTTATATCTAAATATACTTATAAAAGTATCACTATATTTAAGTGTAGTCTGCTGACGTGTATAAACTTGCTAGAAGGACTGGGACGCTGGAGCTGTTGCGTGGCTGTCCACCTGCTATATAACCCATTAACTATGCTGGCCGTCCTACAATAGCCGTTGCAAATGAAAATGGATGATATGTCGCTGTCAGGCCTGGATAACACCAAGCTAGAGgCCTTGGCTCATGACATATACTCAGACTTGGTGGAAGATGCATGTTTGGGGCTTTGCTTTGAAGTGCACCGAGCTGTCAAGCAAGGCTACTTTTTCCTGGATGAGACGGACCAAGAAAGCATGAAGGATTTTGAAATTGTGGACCAGCCAGGGTTGGACATATTCGGACAAGTGTACAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGTAACAGGAGCATAGCAGCCTCGCGATTCGCCCCTCACCTGGAGAAATGTTTGGGAATGGGGCGCAATAGCAGCCGCATCGCCAGCCGCAGGATAGCCAGCAGCAACAACACAAGCAAGTCAGAAAGTGACCAAGAGGACAACGATGACATCAATGACAACGACTGGTCATATGGTTCAGAAAAGAAACCCAAGAAGAGAAAGTCAGACAAGAATCCAAATTCCCCCAGACGGTCCAAGTCTCTGAAGCATAAAAATGGAGAGCTGAGCAGTAGTGTAAATCCCGACCTTTACAAGTACAACTACAGTTCTGGGATCAGCTATGAGACTCTGGGGCCAGAAGAGCTCAGATTTCTCCTGACAACGcaaTGTGGGGTCGTATCAGAGCACACTAAAAAGATGTGCACGCGGTCCCAGCGCTGTCCCCAGCACACGGACGAGCAGAGGAGGGCAGTCAGAGTTTTCCTCCTGGGGCCGTCCGCGTCAACACTGCCCGACCCCGAGTCAGTGCTGGAAAATGACGGGTATGACACCCCTGATGGACAGCTCATCATGTCCCGCCTCCAGTGGGATGGCTCATCTGACATCTCACCTTCAGACTCCGCTTCCTCCAAAGCCAGTACAAATAACTCAGACTCAAAGAGAcctaagaaaaagaagaagcctAGCTCTCTACTCATGAGTAgtgctggagtgtgtgagagggaaaaAGCAGGAGAGCGAGGAGAacgagagagaggaggaggagggagcagcagcagtgtgagtGGACTGGGTGGCGCAGGCACTAGCAGTAGCAATTCCCAGAGTGCACTTGCCCTGTCAAATCGTAAGAAGAGACCCAGACCTCCACCTCCTCCGGCCCCTAATATTTATGATGACCTGAACtaaaagaataacacacacacaaactccaccatGATTGTTACACagacttctgtttttttttttttcttcgctATTTTAAAGCAGgatgtgtgtttgcatatgtATGTCATGTGCAGTTGAATGTTGGGATTTGCGTTTACTCGTGATTGGTATAAATGTGCTATAGCATGTCCAGACTAAAGTGAGGTGATGTGCGTGCTTGGTAAATCCTTTTGAATAATTCTTTTAACGGTTTGGCTTCAAAAACCACACTATAATGCTGCTGCCTCTTAACTGATGATGCTGTTTCAGAACAGTCCTACTGCTTCCTGCTAAATAATGCTCCTTTGATAATCACTGTTGTAGCTTCAGGCCAAATTATGCTCTTTCAATCAACACACTTATTGTCCGCCACCTCCTGGTAGATATTTTTCAGTATACATTGcactatttatttacagtgtataATTGAGTGTGGTAGTGTGCACGTTGTCTTTTTTGGGTCTTGAGAGCACTTATTAcacctgttttattttacactgaactgctaaaaaaaatagcatttattCTTGAGTAATGTAAGATGCACTTCGTTTGGAGTAAATACAAAAGCCTTATAGCTTtttaaagtggatttttttttcatcttttatttttgtaatttgtgGATTCAGATTTAAAGCGtgtataaaatgtttctgtggtGGAGGGATAAAAGATTCCACTGTTACTTACTGTACATAGGaagttgtgctgtgtgtatggATATGTCGTAATTTTTCAATGCTGGCGTTGGTTCTCTCACTCCATGCAGAACATCCTGTGGTATTGTGAATAAAGACTGGCGTGTCTCACCTGGAA
>XM_026916462.2
GATGATCGGTAGTTGATTAGTGATGTCTTGCGTCTGTCAAAATGGCTGcgctttattatttttccatatttaaatattcagcgGCTTTTTCATCTGTATATTAGATAGTTTATATCTAAATATACTTATAAAAGTATCACTATATTTAAGTGTAGTCTGCTGACGTGTATAAACTTGCTAGAAGGACTGGGACGCTGGAGCTGTTGCGTGGCTGTCCACCTGCTATATAACCCATTAACTATGCTGGCCGTCCTACAATAGCCGTTGCAAATGAAAATGGATGATATGTCGCTGTCAGGCCTGGATAACACCAAGCTAGAGgCCTTGGCTCATGACATATACTCAGACTTGGTGGAAGATGCATGTTTGGGGCTTTGCTTTGAAGTGCACCGAGCTGTCAAGCAAGGCTACTTTTTCCTGGATGAGACGGACCAAGAAAGCATGAAGGATTTTGAAATTGTGGACCAGCCAGGGTTGGACATATTCGGACAAGTGTACAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGTAACAGGAGCATAGCAGCCTCGCGATTCGCCCCTCACCTGGAGAAATGTTTGGGAATGGGGCGCAATAGCAGCCGCATCGCCAGCCGCAGGATAGCCAGCAGCAACAACACAAGCAAGTCAGAAAGTGACCAAGAGGACAACGATGACATCAATGACAACGACTGGTCATATGGTTCAGAAAAGAAACCCAAGAAGAGAAAGTCAGACAAGAATCCAAATTCCCCCAGACGGTCCAAGTCTCTGAAGCATAAAAATGGAGAGCTGAGCAGTAGTGTAAATCCCGACCTTTACAAGTACAACTACAGTTCTGGGATCAGCTATGAGACTCTGGGGCCAGAAGAGCTCAGATTTCTCCTGACAACGcaaTGTGGGGTCGTATCAGAGCACACTAAAAAGATGTGCACGCGGTCAACACTGCCCGACCCCGAGTCAGTGCTGGAAAATGACGGGTATGACACCCCTGATGGACAGCTCATCATGTCCCGCCTCCAGTGGGATGGCTCATCTGACATCTCACCTTCAGACTCCGCTTCCTCCAAAGCCAGTACAAATAACTCAGACTCAAAGAGAcctaagaaaaagaagaagcctAGCTCTCTACTCATGAGTAgtgctggagtgtgtgagagggaaaaAGCAGGAGAGCGAGGAGAacgagagagaggaggaggagggagcagcagcagtgtgagtGGACTGGGTGGCGCAGGCACTAGCAGTAGCAATTCCCAGAGTGCACTTGCCCTGTCAAATCGTAAGAAGAGACCCAGACCTCCACCTCCTCCGGCCCCTAATATTTATGATGACCTGAACtaaaagaataacacacacacaaactccaccatGATTGTTACACagacttctgtttttttttttttcttcgctATTTTAAAGCAGgatgtgtgtttgcatatgtATGTCATGTGCAGTTGAATGTTGGGATTTGCGTTTACTCGTGATTGGTATAAATGTGCTATAGCATGTCCAGACTAAAGTGAGGTGATGTGCGTGCTTGGTAAATCCTTTTGAATAATTCTTTTAACGGTTTGGCTTCAAAAACCACACTATAATGCTGCTGCCTCTTAACTGATGATGCTGTTTCAGAACAGTCCTACTGCTTCCTGCTAAATAATGCTCCTTTGATAATCACTGTTGTAGCTTCAGGCCAAATTATGCTCTTTCAATCAACACACTTATTGTCCGCCACCTCCTGGTAGATATTTTTCAGTATACATTGcactatttatttacagtgtataATTGAGTGTGGTAGTGTGCACGTTGTCTTTTTTGGGTCTTGAGAGCACTTATTAcacctgttttattttacactgaactgctaaaaaaaatagcatttattCTTGAGTAATGTAAGATGCACTTCGTTTGGAGTAAATACAAAAGCCTTATAGCTTtttaaagtggatttttttttcatcttttatttttgtaatttgtgGATTCAGATTTAAAGCGtgtataaaatgtttctgtggtGGAGGGATAAAAGATTCCACTGTTACTTACTGTACATAGGaagttgtgctgtgtgtatggATATGTCGTAATTTTTCAATGCTGGCGTTGGTTCTCTCACTCCATGCAGAACATCCTGTGGTATTGTGAATAAAGACTGGCGTGTCTCACCTGGAA
>XM_034310101.1
ACTGGTATACTGAATGTGCTAAACAGCTAACAGCTAGCAGTTCCTGTATGAATTCACCTGTATGTGTGATAGAAGCGACGCTGTTCGACAAacaatatgtCGTGGCTGTCCACCTGCTATATAACCCATTAACTATGCTGGCCGTCCTACAATAGCCGTTGCAAATGAAAATGGATGATATGTCGCTGTCAGGCCTGGATAACACCAAGCTAGAGgCCTTGGCTCATGACATATACTCAGACTTGGTGGAAGATGCATGTTTGGGGCTTTGCTTTGAAGTGCACCGAGCTGTCAAGCAAGGCTACTTTTTCCTGGATGAGACGGACCAAGAAAGCATGAAGGATTTTGAAATTGTGGACCAGCCAGGGTTGGACATATTCGGACAAGTGTACAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGTAACAGGAGCATAGCAGCCTCGCGATTCGCCCCTCACCTGGAGAAATGTTTGGGAATGGGGCGCAATAGCAGCCGCATCGCCAGCCGCAGGATAGCCAGCAGCAACAACACAAGCAAGTCAGAAAGTGACCAAGAGGACAACGATGACATCAATGACAACGACTGGTCATATGGTTCAGAAAAGAAACCCAAGAAGAGAAAGTCAGACAAGAATCCAAATTCCCCCAGACGGTCCAAGTCTCTGAAGCATAAAAATGGAGAGCTGAGCAGTAGTGTAAATCCCGACCTTTACAAGTACAACTACAGTTCTGGGATCAGCTATGAGACTCTGGGGCCAGAAGAGCTCAGATTTCTCCTGACAACGcaaTGTGGGGTCGTATCAGAGCACACTAAAAAGATGTGCACGCGGTCCCAGCGCTGTCCCCAGCACACGGACGAGCAGAGGAGGGCAGTCAGAGTTTTCCTCCTGGGGCCGTCCGCGTCAACACTGCCCGACCCCGAGTCAGTGCTGGAAAATGACGGGTATGACACCCCTGATGGACAGCTCATCATGTCCCGCCTCCAGTGGGATGGCTCATCTGACATCTCACCTTCAGACTCCGCTTCCTCCAAAGCCAGTACAAATAACTCAGACTCAAAGAGAcctaagaaaaagaagaagcctAGCTCTCTACTCATGAGTAgtgctggagtgtgtgagagggaaaaAGCAGGAGAGCGAGGAGAacgagagagaggaggaggagggagcagcagcagtgtgagtGGACTGGGTGGCGCAGGCACTAGCAGTAGCAATTCCCAGAGTGCACTTGCCCTGTCAAATCGTAAGAAGAGACCCAGACCTCCACCTCCTCCGGCCCCTAATATTTATGATGACCTGAACtaaaagaataacacacacacaaactccaccatGATTGTTACACagacttctgtttttttttttttcttcgctATTTTAAAGCAGgatgtgtgtttgcatatgtATGTCATGTGCAGTTGAATGTTGGGATTTGCGTTTACTCGTGATTGGTATAAATGTGCTATAGCATGTCCAGACTAAAGTGAGGTGATGTGCGTGCTTGGTAAATCCTTTTGAATAATTCTTTTAACGGTTTGGCTTCAAAAACCACACTATAATGCTGCTGCCTCTTAACTGATGATGCTGTTTCAGAACAGTCCTACTGCTTCCTGCTAAATAATGCTCCTTTGATAATCACTGTTGTAGCTTCAGGCCAAATTATGCTCTTTCAATCAACACACTTATTGTCCGCCACCTCCTGGTAGATATTTTTCAGTATACATTGcactatttatttacagtgtataATTGAGTGTGGTAGTGTGCACGTTGTCTTTTTTGGGTCTTGAGAGCACTTATTAcacctgttttattttacactgaactgctaaaaaaaatagcatttattCTTGAGTAATGTAAGATGCACTTCGTTTGGAGTAAATACAAAAGCCTTATAGCTTtttaaagtggatttttttttcatcttttatttttgtaatttgtgGATTCAGATTTAAAGCGtgtataaaatgtttctgtggtGGAGGGATAAAAGATTCCACTGTTACTTACTGTACATAGGaagttgtgctgtgtgtatggATATGTCGTAATTTTTCAATGCTGGCGTTGGTTCTCTCACTCCATGCAGAACATCCTGTGGTATTGTGAATAAAGACTGGCGTGTCTCACCTGGAA

Function

symbol description
atxn7l3 Enables nuclear receptor coactivator activity. Involved in histone deubiquitination; histone monoubiquitination; and positive regulation of transcription, DNA-templated. Located in nucleus. Part of DUBm complex and SAGA complex.

NR:

description
PREDICTED: ataxin-7-like protein 3 isoform X1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000124 SAGA complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K11363 SGF11; SAGA-associated factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916461.2 True 2261 mRNA 0.44 13 8226297 8236621
XM_026916462.2 False 2190 mRNA 0.43 12 8226297 8236622
XM_034310101.1 False 2156 mRNA 0.45 13 8226297 8236243

Neighbor

gene id symbol gene type direction distance location
si:busm1-163l24.3 LOC108276929 coding downstream 16521 8204060 ~ 8209776 (-)
si:busm1-163l24.4 LOC108277007 coding downstream 22944 8201765 ~ 8203353 (-)
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 71023 8130367 ~ 8155274 (-)
rprml LOC108261071 coding downstream 240475 7984469 ~ 7985822 (-)
LOC113528501 cq072 coding downstream 258307 7961774 ~ 7967990 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding upstream 1528 8238150 ~ 8248789 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 330149 8566771 ~ 8660121 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 479702 8716324 ~ 8728598 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding upstream 493343 8729965 ~ 8745043 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding upstream 511087 8747709 ~ 8762587 (-)
G207650 NA non-coding downstream 25519 8176358 ~ 8200778 (-)
G207653 mrc2 non-coding downstream 111723 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 189449 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 196848 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 278126 7943678 ~ 7948171 (-)
G207732 NA non-coding upstream 117088 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 195376 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 256193 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 297881 8534503 ~ 8534712 (-)
G208016 NA non-coding upstream 338013 8574635 ~ 8649363 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 520805 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 795185 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 904335 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1500132 6646058 ~ 6726165 (-)
G206604 NA other downstream 2031301 6126910 ~ 6194996 (-)
slc4a1a LOC108279353 other upstream 13263 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 43145 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 47852 8284474 ~ 8284592 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 471332 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 876344 9112966 ~ 9142871 (-)

Expression


Co-expression Network