arf2a (arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546)


Basic Information

Item Value
gene id arf2a
gene name arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4952096 ~ 4965626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916469.2
ATCTTACTTTGGACAACGCCCATGGCGCGGCTGCTTTCAGTCCAGTGAAAGACGCCATTTTGTCGTTAGCGGTGACGAGGAGAACAGGGATATTGTTGGAAAGCAGCACTGAAAAgATCTGCCACCATGGGGAACATGTTTGCAGGCCTCTTTAAGAATCTCTTTGGGAAGAAAGAGATGCGAATCCTGATGGTGGGTTTGGATGCTGCCGGCAAAACCACCATCCTCTACAAACTCAAACTGGGAGAGATTGTCACCACCATCCCCACTATCGGTTTTAACGTAGAGACAGtagaatataaaaacattagtTTCACGGTGTGGGATGTTGGCGGTCAGGATAAGATCCGGCCGCTGTGGAGGCACTACTTCCAGAACACACAAGGTCTGATCTTTGTGGTGGACAGTAATGACAGGGAGCGAGTGAACGAGGCCAGAGAGGAGTTGACGAGGATGCTGGCTGAAGATGAGCTCAGAGATGCTGTGCTGCTGGTTTTCGCCAACAAAcagGATCTGCCTAACGCTATGAACGCAGCAGAGATCACAGATAAACTGGGTCTGCACTCACTGCGGCACCGCAACTGGTACATCCAGGCCACATGCGCTACCAGTGGAGACGGGCTATACGAAGGCCTCGACTGGCTTTCCAACCAGCTGAAAAACGCTAAATGATCCATTCCACCCAGCCCTctgcgctctgtgtgtgtgatgtgtgcgtgtgagaaTGGCGGCGCTGGATTTAGTCTCTCGGTCACCCACTTTATCCACccctttcttcttttgtttggtTCTGTAGACTTTAGAGGCTCTCCCCAGTGCTGACTTGTGTACACACATACCGGAATggaagtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtatgtgtgtctgagtgagaaATGAGAGTGGGAGCAGCCCTGCTGTGCTTTTGAACACATGCTCCTCGTACAGCTcgcttgtctctctctctctctctctctctttctctctcttcatatcCCTCATCTCCCCAGTTTTCACAAAGCAAAGAATGACCCAGGatgctgaatgttttatttacttacacacagaataaatgaatatattgaAATAAGTCTTGATTTCCATCCTCTGATGATAAAACAGTCACGCATGTCTAAGATGTTACGAGCCGTTGTCACCGTATTTTGCCCCACTTATGATGAAACTCATTGTAACCTGCATCAggttgggagaaaaaaaagaaaaagacaataaaGTGATTTTCCATCCTAGATCCTTCTTTGCGTTATTTTAGAAATGAGGCTCATGAGGTTGCCATGAACATCGCTGTTTCCTGAGGCATATTGAGGCCTGACTAGTGTAATGAAAGCCCAGCGTTTTCTCTGAAGTACACGGTTGTCGGTTCTggataacaggaagtaatgcATTTGAAATGTTTCACCTCGCAttctaatgtagctaacaataAGGGGATGATGATAATAGCATGATTTTCGTTTAGTCCTAATTAGTGACTCTGCGTTAATCCATTGTTGGCGACATTGGCAATGTTTATGACTGAACTgttgctttaaaatgtaaaagttgtttGTTCAGCATCTGTCTTTGAGACTGAGAGGAGGCTTATCAAGGAGCAGTGAGGCCATTTTAGAGCTGCTCccactcatttttcatttttctttttttttttcttgtttttattaaatgttgttCCCCACCTTTAGCCTTGTAAGAGTCACAGCAACCATAACCACGTCTTTTAAATGCTGCAGAAAAATAATCCTTAACTAAACGTACTCACCACACATTAAGAGGGAAAAGCGCAAGTCCTGGATCCGAGGGAATAATAGCagattggaaaaaaacaaaacaaaaaaaacaaggataGCTCCGTCAAAAATCAAAATGGCAGCCTTTTCTGGACAGCCGGCTGTGTTGTGTTTACATCCGAGCAAATTAATGTCACCGTGTCTGAATAACCGGTTTAATCCACTCTCTGATTTTAAGCTCCATCTTTTTGTTTCACTTCTTTCTTGAAAAATCATTCAAcccttttggaaaaaaaaatgtacgtATAGCATAACAGCCAGCTGCCGACGTTGATTTTGACAAACTGACAGTTTCTTTTCCTCTGTTATCTGTATTCCAAAGGCTTCTGGGAATGTTACATTGATTACAAACCAACACCCCAAAGGTCATGACCCTGTACTGACCTCTCAGAAAGGAACGGGTGAATGTGCACCCTCATCAGATCCACAACTGGATGTTTTGCGGacattttgtttccttttatttcttctgttttttttttttttctttacacaaCGCACCAAAACTCATCAGAGTTTCAAAAACTctaatggctttttttttattattattattgtaatgatCTTGTAGACCTACTGTAGTGGATGAAATTAACTGATTTATTTGAATGACACATCATCTATCTGGaaggtaaataaaaatgtgtaagaaaatgtattttagcTAGCCTCTTCATTTAGCTACCCTATGTTCTGATGTGAAGCTTTAATTTTAAgaatttctg

Function

symbol description
arf2b Predicted to enable GTP binding activity. Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).
arf2a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane.

NR:

description
PREDICTED: ADP-ribosylation factor 1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916469.2 True 2545 mRNA 0.42 5 4952096 4965626

Neighbor

gene id symbol gene type direction distance location
si:ch211-278a6.1 srcin1 coding downstream 16115 4773679 ~ 4935981 (-)
tubg1 tubg1,LOC107721485 coding downstream 261599 4671755 ~ 4690497 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding downstream 361431 4563378 ~ 4590665 (-)
ramp2 ramp2 coding downstream 437459 4498898 ~ 4514637 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding downstream 557567 4359299 ~ 4394529 (-)
gpatch8 gpatch8 coding upstream 49941 5015567 ~ 5048818 (-)
baxa bax coding upstream 115962 5081588 ~ 5087023 (-)
mpp3a mpp3,LOC107720025 coding upstream 692211 5657837 ~ 5691272 (-)
si:ch211-198m17.1 NA coding upstream 732461 5698087 ~ 5730023 (-)
znf281a LOC108260862 coding upstream 791518 5757144 ~ 5777225 (-)
G205558 NA non-coding downstream 123550 4828253 ~ 4828546 (-)
G205541 fmnl1a,LOC108278868,LOC107720013,LOC107721528,LOC107654518,LOC107590427,LOC107688135 non-coding downstream 181252 4766737 ~ 4770844 (-)
G205488 NA non-coding downstream 251133 4699200 ~ 4700963 (-)
G205484 NA non-coding downstream 391674 4553297 ~ 4560422 (-)
G205481 NA non-coding downstream 400228 4549561 ~ 4551868 (-)
G205628 NA non-coding upstream 91284 5056910 ~ 5057116 (-)
LOC113528378 NA non-coding upstream 315104 5280730 ~ 5284905 (-)
G206164 NA non-coding upstream 666089 5631715 ~ 5631919 (-)
G206210 NA non-coding upstream 756008 5721634 ~ 5727680 (-)
LOC113528476 NA non-coding upstream 987172 5952798 ~ 5953504 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 217194 4722417 ~ 4734902 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 834453 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 907521 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 1086247 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 1538329 3382831 ~ 3413767 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 123710 5089336 ~ 5091922 (-)
G206236 NA other upstream 789141 5754767 ~ 5756733 (-)
G206282 NA other upstream 875511 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 975236 5940862 ~ 5950997 (-)
LOC113528542 NA other upstream 988107 5953733 ~ 5961050 (-)

Expression


Co-expression Network