ccdc43 (ccdc43)


Basic Information

Item Value
gene id ccdc43
gene name ccdc43
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4227165 ~ 4233963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916492.2
GCGATCTGCGCGGACACCTCAGCACGCAGTCGCAGGACCCCAGCCAACATGGCGGCGCCCGACTTCTCGGCCGGGGAGTTTGAAAAGTGGCTGAATGAGCGGCTGGACGGCCTCGGGGCGGACCGGGAGGTTTACGGAGCCTACATCCTCGGTGTGctgcaggaggaggagagcgACGAGGAGAAAAGCGACGCGCTGAGCGGCATCCTGTCCGCTTTTGTGGATGAAGACACACTCAAAGAGGTTTGTGAGCAGATACTGAAACAGTGGACTGACTGCTGCTCTCGGACCGCAGCCACCAGCAATCAGCCAGAGGATGAGGTTCAGGCCATCGCCAGTCTTATTGAGAAGCAGGCTCAGATTGTGGTCAAGCAGAAGGAAGTGTCCGAGGAGGCCAAGAGGAGGAAAGAAGCGCTGCTCGCGCAGTACGCAAACGTGACGGACGAGGAAGATGAAGTGGAGGACGAGGAGGAAGCGGCAGGAGCTGTGGGAATCCCCAGCGACAAGTCCCTGTTTAAGAACACCAACGTGGAGGACGTGATGAACCGGCGCCGGCAGCAGCGTGAGCAGGCCAAGGAGGACGCGCAGAAGAAGAAGGAGCAGGACAAGATGCAGCGTGAGAAGGACAAGCTCACCAAGCAGGAGcgcaaagacagagagaagaagcgTACACAGAAGGGCGAGCGAAAGAGATAGACGAGGAAATCGATTACGGACTAAATATGCTGAAGACGAGAGACAAGTGACACCTCTATGGACTGTGTTCTGGTGGAACGTTTgggggtttttgtttgtttgcttgtgttttttttttttttcttttaataaacagGGTTTCAGATCTCAGCACCACTCCTTTAGCCCTTTGTACTGCTCACTGCGGTGTGTATCCCTGCTGGAAAAGGCACACACGAGAACATTTTGGCATCTATTAAAAGTGTATTAATGATGTACAGGTGTGTTTTGGGAGACACTTTTAAACACTGCTGCTCTGCTCAGACTGTCTCCTATTAGGTAACACACAGTTATGGCATAAAACATGTTCTGTTAAACATTTCAAACggatttgtctttttttttttttttttttttttcccttaaacaGATGCCAAAATGTCCTTCTGAGTGTAGCATAGCTTGagaatgtaattatgtaatccATTTCTCATGAACATGTGACTACAGCTTACTgactcttttcattttttcagcctaatctaGTGCGTCTGTCGTGTACGgatgataataataaccttggacaaaaaaaaattcaccacatTTTCCAGTTGATTGAGTCTAAGGGCAGTCGATGAATTCTGCCAATAAAAGCTACTCATCGAGATGAGACAGATGTGAAATAAAGTCTCGCAGAAGCTGTTCTTACGGAGTTCTGTTCAACTTTTCCAACACTgcagcaatacagtaaaaaaggAAATCCTGAAATCCTGTTACTTCTCTCTTTGTGGTTATCCCTGCATGATCAGACTTACAGAACTTTTCTAATTCAATCTCTAAAGAGATGTAGCTCTTAATTATAAGGATTTTCAAgttctctgtttgtttgttttttctcagtaCATAGAAACATGATCCTAGAGATACAGTAGATACGATGTTTAGAATTCCTTTAAGAGACATTTGAAATACACATGAAGTGAGCGCATAAATTTAGTTTTTTACATTATTGCGTTTTGGGGCTTTGTGGAAAAATATTagccttttttctttcaaactTTATGCTGCTCTTTAAGTACTTCTGTCATAAAGCTCATACACACGTGATTATGTTAAAGCTGTTCATTGAGGATAattgtcattctttaacaatctcactgacacacactggtGGTCTTTGCTTTCAGTTAACAAGCCTTTAGGAAATAACTTGAAACACTCTGCAAGCCTTCTTTTCATGTAGCAATACAGAGTTCACCAAAAACATTACATACAAAAAGGATACAAGGGGACTTGATAGGTTTTGTTGCTTCTCACATGTATTTTTGTTGTAATATTTAATCACTCTGCTGTACCTTTCCATTTCCTCATGGCAGTCTACTCAGAACAACTTTTATATTCATGACTTATGAAATTTACTGAGATTTGTTTCAAGAAGACTTTGTAATTTCAGGCAAATAAAGGAACATACTAGTGCTCTAAA

Function

symbol description
ccdc43 Orthologous to human CCDC43 (coiled-coil domain containing 43).

NR:

description
PREDICTED: coiled-coil domain-containing protein 43-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916492.2 True 2158 mRNA 0.43 5 4227165 4233963

Neighbor

gene id symbol gene type direction distance location
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding downstream 13432 4211229 ~ 4213733 (-)
mylk5 LOC108256285 coding downstream 34574 4152059 ~ 4192591 (-)
strada strada,LOC107693497 coding downstream 294345 3917672 ~ 3932820 (-)
pex11a pex11a coding downstream 319738 3904787 ~ 3907427 (-)
snrnp70 snrnp70 coding downstream 325721 3891174 ~ 3901444 (-)
LOC113527979 c1ql1,LOC102227234,LOC103393155,LOC107729572,LOC101070426,LOC104923905,LOC103367899 coding upstream 125336 4359299 ~ 4394529 (-)
ramp2 ramp2 coding upstream 264935 4498898 ~ 4514637 (-)
cntnap1 cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128 coding upstream 329415 4563378 ~ 4590665 (-)
tubg1 tubg1,LOC107721485 coding upstream 437792 4671755 ~ 4690497 (-)
si:ch211-278a6.1 srcin1 coding upstream 539716 4773679 ~ 4935981 (-)
G205226 NA non-coding downstream 3032 4223807 ~ 4224133 (-)
G205217 NA non-coding downstream 16567 4210435 ~ 4210598 (-)
G205211 NA non-coding downstream 20866 4206100 ~ 4206299 (-)
G205155 NA non-coding downstream 95198 4129141 ~ 4131967 (-)
G205165 NA non-coding downstream 122940 4102356 ~ 4104225 (-)
G205244 NA non-coding upstream 119522 4353485 ~ 4354384 (-)
G205246 NA non-coding upstream 122353 4356316 ~ 4356562 (-)
G205266 NA non-coding upstream 152565 4386528 ~ 4386748 (-)
G205269 NA non-coding upstream 163110 4397073 ~ 4397301 (-)
G205291 NA non-coding upstream 271235 4505198 ~ 4507712 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other downstream 109522 4092913 ~ 4117643 (-)
G205173 gfap,LOC103392664 other downstream 182590 4040481 ~ 4044575 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 361316 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 813398 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 1149147 3073977 ~ 3078018 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 488454 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 855373 5089336 ~ 5091922 (-)
G206236 NA other upstream 1520804 5754767 ~ 5756733 (-)
G206282 NA other upstream 1607174 5841137 ~ 5841477 (-)
retsat LOC108257121,LOC108432054 other upstream 1706899 5940862 ~ 5950997 (-)

Expression


Co-expression Network