si:dkeyp-69e1.8 (LOC108278349)


Basic Information

Item Value
gene id si:dkeyp-69e1.8
gene name LOC108278349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11671706 ~ 11677461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916500.2
tgtgtgtctgtgtgcgcgcgcatgcACACATCCTTATAGGCTAAAGCCATTTCTCAGCCATGTGATTGGAAACACACCAGACAGAAGAGGATagtcagaagagagagagagggagtgtaaAAGGACAATGAGACTAAGTGTGACCTAAAAGACTTGTATGTCTAGGGAGAAAATCAGTGGCTTcccttttgtgtgtttgtttttctttttttggcagAACAGCTTTCAAGTTGCAGGAAAAGGAGGAAGTGCTGCGAGACGGAGAGCTGACTAGCACACTACAGCTCTAGGGCACTCAAGGATCAGAGCTGCAGATAATGGAAGAGAAAACAACACAAGGCACAACTCATGACCTGGATGGAGAGCCTAAGGAGCTGAGAGATTCTGCTAAACCAGAGTGTGAGCTGAGGCTGGTGTTGCTGGGCTGGGCAGGCACGGGGAAAAGCAGTTTGGGTAACGCCATCCTCGGCAGTCCGGTGTTTGATACACGCCATGGTTCCACCTCTCAGAAGCCAGTAACCATGAATTGTGAGAAGGGGTGTGCAAGTGTGGCTGGAAGGCAGGTGGTTGTGGTGGACACTCCAGACTGGTTCTACTCGGAGAGGCCCGAAGAGGAAGTGCACCACCAGCTGGCTCTCTGCGAATCCCTGGCTGCTCCAGGACCCCATGCCTTCCTGCTCTGCATCTCTATCCATCGCCCATGTGAGAACCTCCAGGCTCTGGATGCCTTAGAGAAAGTGTTTGGTCTCGAAGCCATCACCAAACACACTGTTGTCCTGTTTACTGATACGGACCAGCTGTCAGAGGGTCAAACACTGAAGGAGGTCCTTAACCCCGAGCAGAAGGATTTGCTGGAATTGGTGCAGAGGTGTGGAGACCGTTATCATGTCATAAAAGTAGATGAaggaaaggaggaggagaaaggcAGAAAGAGTGTGGAGGAGTTGTTGGAGAAGGTGGAGAAGATGGTAAAAGAGAGTGGGGAGGAATTCTATACCTGCCCTCCTCTCTTTCACatagaagaggaagagagaaggatGGAAGCAAGTATTGAGGAAAGCTCATCCAATGAAATCGTGAGCAAGTGGAAAGATGAGGTCGACGAAGACTCAGGTGTGGAGCCAGAAGTGAGCACAGAGAAAACGGAGGAGAGTGGAGATGGTCTGGAGGCAGAGGAGGACATTGCTTTATCTCCTCCTGCACCTCCTCCCTCGTTCTTGCGCTGGGTTTGGGACACAGTGGTTGGATGGGTGCTGTGGCTGCCCAGCCTGGTGAGGGGTACCACTTTACTTGGCTCTattgtggggttgtttttcggGGGTGCCATGGGGGCTACTGTGGGCTCTGTTGCCACCGAGGTGggcagaagaaaaaacaaaacaaaagtaaaaacaaaataacactcTTTGTATGCATCAGAACACTTTTTGAAactgaaaatgtataaaatttgctacagaaaaaaaatctcctggGCTCAGGTGAGCAAGACAAAAACATTAAAGTTGCAATACTGTATCATTAATGCCAACCAAAAGTAACTACTTTTGAGCTAatgttaaatgataaatattaatttaagcCTTTCTGAGATCTTGGTCTTTAAAACTAGGTTTAAGGAAAGGTTCTCGGTACAGATTTATAAGCACGTAAAACTATACAATGAATCTATACTTTAAGGCATTTTTGCTTCTTGatgctaaattacccctaaTCCTGTTCTTCAGAATAAGCATCAATGTCTATTATTTATAGACTAGAATAACAGAACATATTTCTATAATAccataatatttttattgttatactCGTCAGGGCATGAAGGTAGTTTACGAAGGTAGAAAAGTCTGTGGTGTTGTATCTGTAATGATAGAGAGTCAAATTACTAAGTGGAATTGCTCCCAAGTGAAAGTTGTTTACCACATGGGTTTTACTCTGctcatttatttacatgattTGAAGCTGTCCAAACATCAGAGAGTTAGTCAGTTACTTTGCCTTGTTGATTATTTAGGGAGTTCTGAAGAATGATTTAAGTGCTGAATAATAATTTGCTTATCCACTGTAGCACGGTATGCGCTAAACTTACAGTGCGTTTGTTTCTTATGTATTCACCAGCTCACATCATGCATTTTCATAGcacaaattcatttaaaaattttttaatctaaataaaaattccCATCCACATTAGTAGTGCTTCTACTTTATGTTCATGTAGGTTACATGGTTTTTGTAAAGCTGTTACCAATTGCAGATAACAGTATATTATTAGACACAGCTCAAGTGCTACGTTACTCATGCTGTTTAGACAGCTTTTTGAttcacagaggaaaaaaaaaaaatctggtttatTACACACTTGGCAGGAGTGCTTTGCTGTGTAGCTTATGTATTTTGAGCAACTGAAAATGTACAAGTAAAACTAAATAATCCAAA

Function

NR:

description
PREDICTED: GTPase IMAP family member 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916500.2 True 2439 mRNA 0.43 4 11671706 11677461

Neighbor

gene id symbol gene type direction distance location
hmgxb4a hmgxb4 coding upstream 105 11662221 ~ 11671601 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding upstream 9586 11657529 ~ 11662120 (+)
foxred2 foxred2 coding upstream 14579 11648149 ~ 11657127 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 29649 11635325 ~ 11642057 (+)
gcat gcat,LOC107703894 coding upstream 38033 11626282 ~ 11633673 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding downstream 62159 11739620 ~ 11743073 (+)
rfx1a LOC108260824,LOC108432209 coding downstream 152582 11830043 ~ 11850336 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding downstream 184125 11861586 ~ 11919663 (+)
gaa gaa,LOC106601771 coding downstream 356425 12033886 ~ 12045504 (+)
cbx4 cbx4,LOC108260285 coding downstream 438978 12116439 ~ 12122136 (+)
G209392 NA non-coding upstream 37225 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 53472 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 689413 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 724165 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 739278 10932059 ~ 10932428 (+)
G209410 NA non-coding downstream 31267 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 130800 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 342402 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 384108 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 455799 12133260 ~ 12133471 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 93883 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 283686 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 890247 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1683933 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2608293 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 371946 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 457808 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 481242 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 690105 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1757920 13435381 ~ 13445686 (+)

Expression


Co-expression Network