sec24b (sec24b,LOC108434542,LOC107596339,LOC107731363)


Basic Information

Item Value
gene id sec24b
gene name sec24b,LOC108434542,LOC107596339,LOC107731363
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21301643 ~ 21328754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916510.2
GACGGAAAAAGGGGGCGTGAACCCGGAAGCGTGCATGTCGGCGATCGTCAACGTTCCATGgtggcttttattttgaaatggaCACGTAGCAGAGACTCCGATTTCAGTGTTTGGTCCTACAGGCAGATCAGCTCGAAATCAGTGACACATCCTCAGTTTAAAGCAGGTCGATGGCATCGCGAAACTGCTGACATCGGGATTTTGTTTGCTTGGCACTTCATTGAATGCGATATTTGGATCATATCAAGGTGAATTAAAGAGTGAAGTAAGATGTCGGCTCCGGGTTACACCAATCTGAACCCTAATGTTCAGACTTACAGCGCGACGCAGAACGGCGGAGGTCCTGGCACTGCACCCGCTTATCAAAACGGACCAGGTCAGACTCGCCCAGCCATGTATCCTGCCTCGAATTACTATACTGGCGTTCCTCAGCATGGTTACCCCACCATGCCGCCTCAAAATGCCCCTCCAGGAAAAGCTCCACCGACAAACACCAACTACAGCACCAACTACTACCCCAACAGCCACCCTCAGGCTGGGGCACCCCCAGGCACGGGGTCTGCATTTTACTCTGCTCCGCCAGGTCAACTCCCTGTCAGTTCCAACCCCACTGCCTCTGTAGCCCCTCAGTACCCACCGCATTCATACCAGCAGCATTACACCATGTCTGCGAATTACTATGGACAGAATTACAGCACCGTTGCCCAGGGGCAGCAGAATCCTCCGCCAGCATCAAGTGGCGCTAACCTTGGGCCCCCACTTTACCCCATTGTGtcctacccatcagcccctgggAGCAGCCAGTTTGGAACTCTGCGGTCGACCCAGGCTGCCGCAGGAGCGTCGCCTACCCAGAGTGCTTTGCAACCTCAGCAGCAGTATTCTCAGGGCAATGGGGCCACCCCCACACCGCCAGCTCAGCAGGGCTACGGTGCCCCACCCCTTCAACAAACAGCTGCCATTAATGGCCAATCAAATGCAGGCCAGCAGCACTACAATCAAACTGCTCCACCTCCTGTGGGCCCTCGTTACGGCACAGAGGGTGCCGACGGACATCGCCTACCATCGGGCACCCCGTCCACGTCCACCCCGTCTTCCCCAGGACGCCAGTCAGGGCTGCTGATTGGTGGATATGGGGGCAATAGAGCTGCTAGTTCCTccacagggttgccaggtgaCCACTCCTCATCCAGTTCGGACCACGAGgacgaggatgaggaggatgaggaagcAGGTGCAGACAGCTCCTCCACCACCACGGGGAGTGCATCTCCTGTCCCCAACTGTTATGAATCCCTGGAAGGAGGAAATTTCCCAGGCTCGCCTGCTGTtgctcctcctgttcctcccAGTGAACCTGCCAAACAAGCCCCACCCTTTGGCTACAACTATCCAACCATGCAGCCTGGGTACCAACAAAGCCCCGCCCCCCGACCAGAGCCCATCCCTTCGCAGGGAGCATATAATCAACCTGGATATCAGCCATATTCACAGCCATTCCCCAGTCTGAACCAGCTTTCTACAGCATTGGGTGGACTGAGTGGAGTTCCTGAGCTGGAGGTGGAGGCCCTGCGCCCTGTTAACCTGCTGCAGGAGAGAAACATGCTCCCCACAACACACCACGTTCCACCTGAACCCAAGCTCAGCAGCGACCTGCGCAAGGTCAACTGCAGCCCAGATACATTTCGCTGCACTCTGACCAGCATTCCTCAGACTCAGGCCATGCTGAATAAAGCTCGCCTGCCGCTTGGACTTCTACTGCACCCTTTCAGAGATCTGACGCAGTTACCGGTCATCACCTCCAACACTATCGTCCGCTGTCGTTCGTGTCGGACGTACATCAACCCGTTTGTGTCGTTTCTGGACCAGCGCCGGTGGAAATGCAACCTCTGCTACCGTGTGAACGATGTTCCTGATGAGTTCATGTATAACCCAGTCACACGTTCCTACGGCGAACCGCACAAGAGGCCAGAAGTTCAGAACGCCACCGTTGAGTTCATCGCCTCTTCAGactacatgCTGCGACCTCCTCAACCCGCCGTGTATCTGTTTGTACTGGACGTATCCCATAATGCTGTGGAGACAGGCTACCTGAGCGTGCTGTGTCAGTCACTACTGGACAATCTGGAGAAGCTGCCCGGTGATTCTCGCACACGCATTGGATTCTTGACGTTTGACAGCACAATTCACTTTTACAACCTGCAGGAAGGGCTCTCGCAGCCTCAGATGCTGGTTGTGTCTGATATCGATGatgtgTTCACACCAACTCCTGACAATCTGCTGGTGAATCTGAAAGAGAGCCAGGAGCTGGTGAAGGACTTGTTAAACGCGCTGCCCAAGATGTTCATACACACACGGGAGACTCACAGTGCCCTGGGGCCGGCGCTGCAAGCAGCATATAAACTGATGACACCCACTGGAGGCCGTGTGTCTGTGTTCCAGACGCAGTTACCCACCATCGGAGTGGGACTGCTGCAGTCACGGGAGGACCCCAACCAGAGGTCCAGCACCAAGGGCGTGCAGCACCTAGGTCCTGCTACAGATTTTTACAAGAAGCTGGCTCTGGACTGTTCGGGTCAGCAGATCGGGGTCGACCTGTTCCTTCTGAGCTCTCAATATGCAGATCTGGCTTCATTAGccTGCATGTCGAAGTTTTCAGCCGGCAGCATTTTCTACTACCCAGCGTTCCACCATGTCCACACCCTGGCTCTGAAGGCGAAGCTGCAGAAGGACCTGCAGCGCTACCTCACCCGGAAGATTGGCTTCGAGGCTGTAATGAGGATCAGGTGCACCAAAGGAATGTCCATCCACACGTTCCACGGCAACTTCTTTGTGCGCTCCACTGATCTGCTGTCTCTGGCTAACGTGAACCCAGACTCAGGCTTCGCCGTCCAGGTGTCTATAGATGAGAACTTAAACGATACATCACTAGCGTGCTTCCAGGCTGCTCTTCTCTACACATCCAGTAAAGgcaaACGGCGAATCAGAGTTCACACCCTATGTCTGCCTGTGGTGAACCAGCTAAGCGATGTGTTTGCAGGCGCCGATGTTCAAGCCATCACCTGCCTGCTCGCCAAcatggcTATAGACCGCTCTCTCTCCTGCAGCGTTTCGGATGCCCGGGACGCCCTGGTGAACGCGGTTGTTGACTCATTAGAGTCGTATCGCTCCAATATCTCCAACGTGCAGCAGACTGGTGTCATTGCCCCCTCTGCCTTGCGCCTCTTCCCTCTATACACACTTGCTCTGCTCAAACAGAAAGCGCTGCGGACGGGGACGAGCACACGGCTGGACGAGCGGGTGTTCGCAATGTGCGAGTTTAAGAGTCAGCCGCTAAAGCAGATCATGCGCATGATCCATCCTGACCTGTACCGCATCGATAACCTCACCgaacagggGGCGCTGCAACTGAATGAACGGGTGATTCCTCAACCTCCACTGCTGCAGCTCTCAGCTGAGAAGCTCACCAGAGAGGGAGCCTTCCTCCTGGACTGTGGCAGCGTGATGTACCTGTGGTTGGGGAGGAACTGTAACGAGGTGTTCATACGAGACGTCCTGGGCTGCCCTGACTACACATCCATACCAGCCAGCAtgACCGAAATCCCCGAGTTAGAGACGGCGGCTTCTGAGAGAACCCGAGCCTTTGTGTCCTGGCTTCAGGAATCCAGAGGATTTTGCGCCGCCTTCTACGTTCTCAAaGACGACCCTTCAGTAAAGAGCAGTTTCTTCCAGCACCTGGTCGAGGACCGTTCCGAATCCGCATTCTCCTACTACGAGTTCCTGCTCCACGTCCAGCAACAGCTGTCCAAATAGAACCGAACCCGGTCTTGACAACACCGTGGACCCAGTCCGGCAGGACGTCGCACCACCGTCCCGCCATGACACAAACCCCTCCCACCTCCCACTGGCCAGTCACAGCCTGTGGTGCCtcaaagggggcggggctaaagaCCATTGCGGGAACACAAACAAAGCAGCAAAACGAACACGTGACCTAGCGCAAACTGTGCTAATGAGAAAAAGACGCTCtaccctttacacacacttacacgcaCTCTCTGAACTGAGTCTTCTTTCCTCCCTTGAAATGTTTAGCCGCATTTATATCACATGTGCTGAgtctatgtcttttttttttttttttttaaataacttccCCTCATCCCGCCATCATGTGCGCTCAGAGAACCCTGTGATTTAAGTTCTGTAGCTGTTAATAACTCCGCcgtttttccttttctcatcGCTTAACACTGCCTTTCCTCACAACGTAACATACTCTGATAACACTGATAATCTGATGTTATCATTCCCTTCACTGATATATATAgtttctccatctttctctcactctgttcttCCTTTGATTCGTGTCCcctaattcattttttaatcacGAGTGTGGGTGTAGTTTTTAAGGCCGAGCACTAGTCAATCTTTATCCCATCTCTAGCAGCAAGAGGTGGAGCGATGGCatagcccaaacacacacacacacacacacacagcgtaaGACACACCTCTGAGATGCCTGGATCTGTGCTGTTTCTGAAGCTGAGATCAtccttctctctgttttcttggGGAATCATGCGGTAAAGCCTCGCTCTCCACTTTATAACTCTGGAGAAAAGAATATTTTATGTGCGATAATTTATGATGAGCttattgaataaaatgaaagcCTATTCCTC

Function

symbol description
sec24b Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SEC24B (SEC24 homolog B, COPII coat complex component).

NR:

description
protein transport protein Sec24B-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916510.2 True 4694 mRNA 0.53 25 21301643 21328754

Neighbor

gene id symbol gene type direction distance location
LOC113527948 NA coding upstream 7849 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 74795 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 116793 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 219629 21047261 ~ 21082014 (+)
dele1 kiaa0141 coding upstream 257336 21035260 ~ 21044307 (+)
LOC113527892 NA coding downstream 53026 21381780 ~ 21387087 (+)
LOC113527856 NA coding downstream 62149 21390903 ~ 21402724 (+)
LOC117598821 NA coding downstream 76586 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 125364 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 213236 21541990 ~ 21546092 (+)
G214753 NA non-coding upstream 56858 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 115340 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 138339 21162900 ~ 21163304 (+)
G214694 NA non-coding upstream 143555 21144820 ~ 21158088 (+)
G214548 NA non-coding upstream 374965 20908828 ~ 20926678 (+)
LOC117598756 NA non-coding downstream 28096 21356850 ~ 21359059 (+)
G214798 NA non-coding downstream 39270 21368024 ~ 21368228 (+)
G214800 NA non-coding downstream 77619 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 85708 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 98220 21426974 ~ 21448404 (+)
nudt6 nudt6 other upstream 277556 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1128291 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1320263 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1348357 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 1389911 19873076 ~ 19911732 (+)
hopx hopx other downstream 11662 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 153268 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 185819 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 317326 21646080 ~ 21649152 (+)
G215022 NA other downstream 334330 21663084 ~ 22000809 (+)

Expression


Co-expression Network