ppp1r9ba (ppp1r9b,LOC108412948)


Basic Information

Item Value
gene id ppp1r9ba
gene name ppp1r9b,LOC108412948
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9988116 ~ 10033085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916517.2
GAGACAGCGCGGCCGCGTCACTGCTGCTCGCTCGCGGGGAAACCGACAGGCTGAAAACGGCTCGCGGACACAATGGACTCGCAGGCGGACGGAGTTTAACGCACTGGAGCTTTGATGAACACGAAAAACAAGGGGAAAAGGGAGGAGGCTATGCCGTTTCATCTACTCTTTACCACCATTTGATTAACCATGATGAAGACTGAACCCCCATCTGCAGCCAGTGGCACCACAAGCACCACTCTCGGAGCTCGGAGTGCGTCGCCACACAGGAATGCATACGAGGCAGGAATCCAGGCACTTAAGCCAGTCAAAGACCCTGATGCTGCGAACGGTGAAGATGGCAAAGAGGGGAAGTCGCGACCTCTGGGACGGGGTCGCAGGTACGGCTCCAATGTCCATCGCATCAAGAACATGTTCATGCAGATGGGCTCCCCTGGGGAAGAAGAAGATCCGTCAAAGATGAAAGACCAGGCAGTGCGGCTCTCCTTGCCAAGAGCCAGTAGTCTTAATGAGAATGTAGACCACAGCGCACTTCTCAAGCTGGGCGGAACCGTTTCTGAGCGTGTGAGTCGCTTTGATGGGAAGCCTGAGGGCGGAGGTTCCCGTGGGCCTTCCTCTGGCTTCTCTAAGCTGCAGGAGACACGCAAGATTTTTGAGCAGCGCCACCTGCAAGAGAAGCAGGCTGCAACCAACCGCATCCTCCTGAAGAAGGAGCGTGCCTCAGGCTTCCAGGACAGCCGCCTGGACGTAGTCGTACGATTCAACGGCAGCACAGAAGCCCTAGACAGACTGGACACGGAAGGTGGGCCAGTTGAAGCAGTGTCACCCACCGTCAGCCAGCTGAGCGCCGTGTTTGAGAAGGCAGAATTGCGGAACAATCTCCATCGGCCGTCTTCAACCTCACTTCTGCCCTCTCGCCCCAAAATCATCCCCAAAAAGGTGCTAACATTCCCTCAACCAGGAAGCCAAGAAAATGATTTGCAGGCTAAGGAACAAGAAGCAGCCCCTAGAAGTCCGAGGAGAACAGGATCTCAAGCTAACACAACAAGCAACAAGCCATCAGCAGATGAGGCGTCTGTTTTGTCTGCAGAGCCAAACGCAAAGCAGTCAAGGGAACTCCAGGACTCTGCAGGAACCAATACAGAGAAGGAGTCCAAACCTGGGGAACAGGATGCTGCTAGTAACCAGGAAGCAGGGAGCAGATTGGTGCACGCGGAGGTTCATGCATCCCTTGAGAATGGGGAGGCTGAAAATAGTCACAAGGCTGCCGAGCAGAGAGATGAGCGCAGGCTGAACCAAGGAGACACCTCCACTAAAGAGGAGGAGGCAGCAGAGGAGGAGCACCTAAAGGAGGATTATTCAGAAGCTGACCTGATAGACATCAGTGCCTATAGTGGTATAGGTGAGGACTCTGGTGGGAGTCAGCTGGATGAGGACGAAgaggctgatgatgatgatgaggcttATGAACCGGAATCTAGCTGCACAGAGATTCCAGGACTGCTGACAGAGGATGATCCTCCAGCCAGTAGGAAGATCCGTTTCAGCACTGGGCCTATTAAGGTGTTCACCACGTACTCCAATGAGGATTATGACCGGCGTAACGATGACGTCGACCCTATGGCAGCCTCAGCTGAGTATGAGCTGGAGAAGAGAGTGGAGAGGCTGGACCTTTTCCCCGTAGAACTGGAGAAAGATGGCGACGGGTTGGGGATCAGTATCATCGGAATGGGCGCTGGCGCAGACATGGGCCTGGAGAAACTTGGAATCTTCGTCAAGACTGTGACAGAGGGAGGTGCTGCTCACCGTGACGGAAGGATCCAGGTGAATGACCTGATAGTTGAGGTCGACGGCACCAGTCTGGTGGGTGTAACGCAGAATTTTGCCGCATCTGTCCTGAGAAACACCACCGGCACTGTCAAGTTTATCATTGGCCGAGAGAAGCCCGGTGAGCAGAGTGAGGTAGCGCAGCTGATCCAGCAGACGTTGGAGCAGGAACGCTGGCAGAGGGAGATGATGGAGCAGCGCTATAACCAGTAcatggaggaggatgaagaggccgGTGAGTATGGcacagatgaggatgaggagatgAGCCCCATGTTCCCTAATACTATTGAGGTGTTTGACCTGGCTGAGAGTGAGGACATGCTTTCTCCTGTGGAGATGGACCCAGAGAAACTCACCCACAAGTTTAAAGAGCTCCAGATAAAGCACGCCGTGACCCAGGCTGAGATCCAGCAGCTGAAAAGGAAGCTGGCTCATGCCGAGCAGGAAAAGCTGCGTTGGAGGATGGAGAAGGCCCAGCTGGAGCAGACCGTGCGAGAGACGAAGGAGCGCATGGAGAAGCTAGAGGGCTACTGGATGGAGGCCCAGAGCCTGTGTCAGGCAGTGGATGAGCACCTTAAAGAGACACAGGCGCAGTACCAGACACTGGAGCGCAAATACAGCAAAGCCAAACGCCTCATCAAAGAGTACCAGCAGAAagaGATTGAGTATCTGAAGAGGGAGACAGCACAGAGGCGTGCACAGGAGGAATCAGAGGCCGGCCACAAGGAGGAAACAGACAGCCTACAGGAGAAGATCACAGACTTAGAAACGAAGGTGGGTGCACTCAAGAGCTCTGAGCCCTCCTAAACCTGCACAGGGAGTATAGAGAACGAGggagagagcaggagaaaaGTCTTTCAGCCCTGGCCGTCCCTCCTTCCTGCATGTTTTCCCCTGTGGCATGCAACAATGGACAACCAAATGACTGCAAGAAACATTAAAGGGATGTTACTGGGGGAAAAGGGGCGCGACAGAGAAATCATAATGTCCTGCCAGACGTGTGGCACAGGCCTGCTCACCTCTAGTCTTCATGACAACCCATGTAATGTAGGACGTGTTTTTGCTTTCAAACAgtatttgaatttgattttttttttctttttttaatggccCTATAAAACATTACACAGCTTAGTCTTGGCAACTCACAGCACATTTGAGTGACACGCCACCTGGACCTGGTGCCAAGCGAActaaggaaaagaaaaatctgtgCAACAGACTTTTGGTTTTCgccaattttgttttttatttttggttttttttggggttttttgcaTCATCTGTGGCAGAATGAGTTGCTGTGGGTTGTACAGCAGTGTCAGAACAGCTGATGGTGTTTGTATATATTCttcaatgtatttaaaatgcttaAGCAATGAGCTGTAGGGGAACAGGGGAAGAGACGGGGTGGAGGAAGTGCTTTGTGGGAGGGGGTAATGCCAGGGTGCAGATGGGTAACAGTAAAAGTGAACGTAAACTAATTTCCCAGTTCTAGACTGGCACAGGTGGAgttgtgtgtttctttcatGCATTTTTTGTCAAGCAAAATGGCAAACAGGGTGTGAGACTCATgtaagttgatgattttgatgtaCCTTCCAAGACTTACATTTCACACTTTGCTTTCCTCTGGACAGTATTACTGGAAGTGTGTCGTGTGATTCAGGCCTCTGGGTCGCTGTGTCCTGCATTTCCCTCACGCATCAGTCACTATCAGTGTATGAATGACAAAGAGAAGCTGTGTAACAGGAGGCCTTGCATGGTTaattctatctttttttttttttttttttaaatctctgctCACCAGATTATTCTTAAAAGTCCAGTAAATGACAGGTTGTGTCAAACTGCAGAGTAATACAACAGTGACACTTCATCTAAAAATTCCAAACAAATGTCCCGCTGTATTAGTTATTTATCTTAAAGCACATGATTGGGTAGTTACTATGCATTATTCTGTAACAGGAAAGGTGtgtagttatgagagtgaggaatgtaagccCGGACCTGCCTATGGTTCCTGGGAGTTTCAGGGGTTAAACATTATTAGATCAAAAGTAACTCTCTTATCAGTGTAATGATAACCGTACATTTGCAGTCTTTTAGCTTTTTCTGGGATGTTATTGGTGagcagctttctttttttttcctacttgaCCTCAAGGcagattttattattgtattcaGTCAAACGAATTTGGGAAACTGGAATttagattttcagcttttagGTAGACATTGGCCTTCAATCTGATTTTGGACCAGCGTCCACAGACGAGATCACAGCTCAGTCATAGCATTAAAGGATAATTCTGGTATTTTTGAACAAATATGTGTTTTTCACAGTAAGGGCATGGTGGCAAACTCCAGACGTTTTCTTGCGTGAGGCGCTGtttagtctttttttgttttttttgtttttttttaatgaagacgTGTCTGGGTGACTGTCGACCTGCAATTACTTTGAACTGTATGCATTTAGTTCAAACCTCCTGGTGTAATCCTTTAAGGACTGGTGTGGAGATATTCTCTCTGTTTGCAATAAGAAAGAAGCTCTGCTGTTGGTATATGTTTATTCTAAATTTCAGTTAAATGGATTGAACATTGATTCTGGAAAGACAGTATTAGTTTGGGCAGATCGAATGCATTAGCTGTAGTTTCCATGGCTTTCTCATGTATGTAATTTAATTCAATCCATTGCTTCCACTTGCTATGTTTTGTGATGATAAAATGTCTCTTATGATGCAGTATTGAAAGCGACGTCTGGGGTTTTATCCGACCTTTTAACAGATATTTTAGTGATACAACAATTATTACTCTGCAACAATATATAATGGGCTTTGTTATTGTCAGTAGAGTATAAATAGAGTTTTTATGTGTGGAAATAGATCTCGCATCATTCACTTGCTCTGGATCCAATTTGAATTTTGTGCACATATGCAAGAAGAATCGTAACAGAGCACACTGCGATAGTCCAGGGTCTGTATGTATCAAGCGTCCCAGCTCAGCCATGCATAATTTTATTCATCAGTATGACAAGCGGAACTCATCGTAAAGCAGCGCTTTTACTCTTGAGAGGTTTGATACATAAATACAATCCCTGAACTACCTCAGGtctatttttctttccatttgttttttttttcctccctgctcttttgaatatttttgcaCATAGACAAATAGAACACCATTcataactggaaaaaaatgtgtaaatgcattGAGTTCTACATGCTACAGTGGGGTTGATTTGATGACAGTCAGCATGACGTAAGCTTGTCTCTGCTCCAGCTGTGCATCTGTGCCAGTACACCTCCGTATGATCCACTCAGGTTGAATGAGTATCAAGTACATGGACCTATTCCGGAGAACATACAGGACTCATTTTTGCGATCAAGTCCCAGGAGGACACTGGAATTCCATTATTCTCTTTCTGGCACAAGGATTCGTTCCGTGCTCAGTGTGTCGCTGTTTACACAATCAGCAGAACAGAATTAAGTTTGTGTGCTAGAGCATACATGCTCATTTTGGGTCAGCTTTTGCCTTTTGAGAaatgtgattactgcagtgggACCTGATCCTGTATCAGAATTCCTGATGGATGGGCCAGTAAAGAACAGAGCACTATCAGGACGAAACACAGCAGGACAAGCTACGTGCTGAGTGATTAtcaaagcactgaaacactaGTCAAACATTCAGAACTTACATTCCACTCAACTTGCTTTTGCGAACGTTGTAGCCTTCTATGAGGTTCACTTGCTTCTGTGTACAGAGAGGAACTCATTCCTCATGCTGGTGTAAGGGTGTTACTCATTTTAACGTGAACTAAAACTTGACTCCATTCCTTCACCAttgaggttttttctttttttattgctttgagTTGCAACcatataaataagaaaaaaaagttccatTTGAAAGGAGCATCATGTTCATCTTGCATAATTTACTGTCATTaacaataaatgcaaaaatgtgttGAATAA

Function

symbol description
ppp1r9b Predicted to enable actin filament binding activity. Involved in cell migration; filopodium assembly; and negative regulation of cell growth. Located in several cellular components, including filopodium; lamellipodium; and ruffle membrane. Biomarker of Alzheimer's disease; hepatocellular carcinoma; and schizophrenia.

NR:

description
neurabin-2-like

GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916517.2 True 5834 mRNA 0.46 11 9988116 10033085

Neighbor

gene id symbol gene type direction distance location
nr1d1 nr1d1 coding downstream 83722 9896866 ~ 9904394 (-)
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding downstream 218198 9767867 ~ 9769918 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding downstream 246783 9737003 ~ 9741333 (-)
hoxb7a hoxb7 coding downstream 259262 9724361 ~ 9728854 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding downstream 270647 9715010 ~ 9717469 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding upstream 9096 10042181 ~ 10061921 (-)
nags nags coding upstream 89301 10122386 ~ 10134023 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 113763 10146848 ~ 10185101 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding upstream 164423 10197508 ~ 10207214 (-)
anks4b anks4b coding upstream 176263 10209348 ~ 10213411 (-)
LOC117599011 NA non-coding downstream 60174 9829627 ~ 9927942 (-)
G208613 msl1 non-coding downstream 70587 9914907 ~ 9917529 (-)
LOC113528446 NA non-coding downstream 149704 9837250 ~ 9838412 (-)
G208473 NA non-coding downstream 240077 9746496 ~ 9748039 (-)
G208391 NA non-coding downstream 482366 9494623 ~ 9505750 (-)
G208649 NA non-coding upstream 30892 10063977 ~ 10066356 (-)
G208758 NA non-coding upstream 153951 10187036 ~ 10187252 (-)
G208771 NA non-coding upstream 188625 10221710 ~ 10290885 (-)
G208951 NA non-coding upstream 308826 10341911 ~ 10342222 (-)
G208964 lmtk2 non-coding upstream 414651 10447736 ~ 10450540 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 255550 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 513638 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 568532 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 784476 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 845245 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 417639 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1609072 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1666764 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2264691 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2300769 12333854 ~ 12339269 (-)

Expression


Co-expression Network