spns1 (spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070)


Basic Information

Item Value
gene id spns1
gene name spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9032844 ~ 9044136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916523.2
aaaagggggggtaACAAAAATGGGAGCTAATTCAAGATGGCGCGGCGCTGTAGTGCAAATTCAGAGTAACAACCGagacaacaaagaaaaagacgGTTATATTAGCGGGTTGCTTGGCATTTTCCCTCAAAAATGGTAGCGCGTCAGTTAGGCTAACATTTATACGTTTAAAGCAATAGAGCTGCTTGAGCTCGGTGTTTAGAGAAGAGTGTGAAAGTGCTGTAGAAGAACTGACTTCACCCCCAGCTGCAGCAGCAATGTCTCTCGTCGATCCGACCTCAGATACCACACCCTTCTTCTCCGATGACGAAGGGGAGGGGACAGATATAAAGGGGGAGGGGCAGTCAAATCAGCCGGAGCCAGAGTGTGCGAGTGGAGTGTCCAAAAACAGAGCGGTGATGACCGTGGCAGTCCTCTGCTACATCAACTTGCTGAACTATATGGACAGGTTCACTGTAGCAGGTGTGCTTCCTGATATTGAAAAGTTCTTCAACATCAGTGATGGCAAATCTGGGCTGCTCCAGACTGTCTTTATCTGCAGCTACATGTTTCTTGCTCCTGTCTTTGGTTATCTGGGTGACAGGTACAACAGGAAGTTGATCATGTGTGTGGGCATCAGCTTCTGGTCTTTAGTGACTTTAGCCAGCTCCTACGTCGCCAAAGATCATTTTTGGGCGTTGCTGCTGACACGGGGGTTTGTGGGGGTCGGCGAGGCCAGTTACTCCACCATTGCTCCCACCATCATCGCAGACCTCTTCATCAAGGAGAAGAGAACTGCCATGCTCTCTGTTTTCTACTTTGCCATCCCCGTGGGCAGTGGCCTGGGCTATATAGTGGGATCAGCAGTGGATGAAAGGGCGAAAGACTGGCACTGGGCTCTGAGGGTGACGCCTGGTTTGGGTCTTTTAGCGGTAgttttgttggtgtttgtggtGCAGGAGCCCAAGCGTGGTGCTATAGAGGCTCGGCCCGAGCACACCCTGCACAGGACCAGCTGGCTCGCTGACATGAAGGCTCTCCTCAGGAAtAAGAGTTTTGTTCTGTCGACGTTTGGTTTCACGGCAGTGGCCTTCGTCACAGGATCGCTTGCTCTTTGGGCTCCTGCCTTCCTCTTCAGAGCGGCGGTCTTCACTGGAGAGAAACAGGCGTGCATCCAGGAGCCCTGTGACACCTCTGACAGTCTGTATTTTGGCATCATCACGTGTGTGACGGGAGTGTTGGGTGTAGCGATGGGTGGAGCAGTCAGTCAGCGTCTGAGGAAGAGAACGCCACGTGCTGATCCGCTCGTGTGTGCTGCTGGCCTCCTCCTCGCTGCTCCCTTCCTCTATCTGTCAATCATCTTTGCCCAGGGCAGCACCATAGCTACCTACGTCTTCATCTTTTTTGGTGAGATGTTCCTCTCGATGAACTGGGCCATCGTGGCTGACATCCTGCTGtatgttGTCGTCCCCACACGGCGCTCCACCGCAGAGGCTTTCCAGATCGTTGTCTCTCACCTGCTGGGAGACGCAGGGAGTCCCTACCTCATAGGAGTAGTGTCAGACTCACTGAAGCAGGCGGACTCTTACATGTGGCAGTTCCGCTCCTTGCAGATTTCGCTCCTGCTCTGTTCTTTTGTTGCTGTGGTGGGCGGGGCCTTTTTCCTGACTACAGCCCTTTTTATTGAAGAAGACCGACACTGTGCCGAGAACTATGTTCCCTCAGTTGATGCACCAATTATTGTCCCTAAGAGAGGAAGATCCACCAAGGTGTCTGTGTCGAGTGTTTTAATTTGAGCAAATGAGGACATGGAAGAATCTAGAGAATGCTCACCTCACTGGGGGAAGTAGATGGATGTAGCTGAGCTTGACACCACTGCTGGAGTAGTGTGGGATGAATAGAGTCACTGATTGAACTTTCACCCCTTCAGGGATTTTTAGGATAatttattatgttatgtttGTTATTAACACCTTTATCATTTTTGGGAACATGACTAACCATCAGGAAGTGTGACATGGCACTTCTGAAGGACTTGCTTTCCTGGAAGAAATGTGCTGTCCAGCATTTAGCATTCTAGCATTCAGAGAAGAGCTGTGTCTCTTACTGAGGAAAGCTGAGGACTGTGGAATTATGGGAAATGGTCTGGAAGAACACATGTTCTGGGAAGGACTTTTTCTGTGAGTGAAGAAGCACAAACTGTGTTTTAAACCTCAAGCTAAAAGGAGGAGATTTTaaccttttgttttattaaccaTTTAGAGACTAAAGTAAATTAACAGATATCATTTTACTGTAATCACACTACATAATCATAATGACATGACTATGCATTGATGTGTAATGTTACATTACCTGGAAGACCTTTATACATGCTATAATATttcaacacatcacacatattaGTCAAGGTCTAGCTGATTTTTTGTTCAGATTAAAAACCAGATAGAAATCAAACACCTACCCCTCTGCTTCTGCCCAAGcgtctgatttttattattctgaatatTAAAACTTGCCCTGATTCTTAATTGAAATCGAATGCAGTCAGTGAGAAAACAGCAGATCTTCAGGATGTGCcacttaaatgaataaattcattcctttttttatttatttttttaagaagacTGTGGTGTTTGTACAAAACGTTTTACTGATCTGGAGAAACTGTAATTTGGGAAGGATCAAGTTTGACAaagcatgtttcttttttaaacattaaattaagcTTCAGctca
>XM_026916525.2
aaaagggggggtaACAAAAATGGGAGCTAATTCAAGATGGCGCGGCGCTGTAGTGCAAATTCAGAGTAACAACCGagacaacaaagaaaaagacgGTTATATTAGCGGGTTGCTTGGCATTTTCCCTCAAAAATGGTAGCGCGTCAGTTAGGCTAACATTTATACGTTTAAAGCAATAGAGCTGCTTGAGCTCGGTGTTTAGAGAAGAGTGTGAAAGTGCTGTAGAAGAACTGACTTCACCCCCAGCTGCAGCAATGTCTCTCGTCGATCCGACCTCAGATACCACACCCTTCTTCTCCGATGACGAAGGGGAGGGGACAGATATAAAGGGGGAGGGGCAGTCAAATCAGCCGGAGCCAGAGTGTGCGAGTGGAGTGTCCAAAAACAGAGCGGTGATGACCGTGGCAGTCCTCTGCTACATCAACTTGCTGAACTATATGGACAGGTTCACTGTAGCAGGTGTGCTTCCTGATATTGAAAAGTTCTTCAACATCAGTGATGGCAAATCTGGGCTGCTCCAGACTGTCTTTATCTGCAGCTACATGTTTCTTGCTCCTGTCTTTGGTTATCTGGGTGACAGGTACAACAGGAAGTTGATCATGTGTGTGGGCATCAGCTTCTGGTCTTTAGTGACTTTAGCCAGCTCCTACGTCGCCAAAGATCATTTTTGGGCGTTGCTGCTGACACGGGGGTTTGTGGGGGTCGGCGAGGCCAGTTACTCCACCATTGCTCCCACCATCATCGCAGACCTCTTCATCAAGGAGAAGAGAACTGCCATGCTCTCTGTTTTCTACTTTGCCATCCCCGTGGGCAGTGGCCTGGGCTATATAGTGGGATCAGCAGTGGATGAAAGGGCGAAAGACTGGCACTGGGCTCTGAGGGTGACGCCTGGTTTGGGTCTTTTAGCGGTAgttttgttggtgtttgtggtGCAGGAGCCCAAGCGTGGTGCTATAGAGGCTCGGCCCGAGCACACCCTGCACAGGACCAGCTGGCTCGCTGACATGAAGGCTCTCCTCAGGAAtAAGAGTTTTGTTCTGTCGACGTTTGGTTTCACGGCAGTGGCCTTCGTCACAGGATCGCTTGCTCTTTGGGCTCCTGCCTTCCTCTTCAGAGCGGCGGTCTTCACTGGAGAGAAACAGGCGTGCATCCAGGAGCCCTGTGACACCTCTGACAGTCTGTATTTTGGCATCATCACGTGTGTGACGGGAGTGTTGGGTGTAGCGATGGGTGGAGCAGTCAGTCAGCGTCTGAGGAAGAGAACGCCACGTGCTGATCCGCTCGTGTGTGCTGCTGGCCTCCTCCTCGCTGCTCCCTTCCTCTATCTGTCAATCATCTTTGCCCAGGGCAGCACCATAGCTACCTACGTCTTCATCTTTTTTGGTGAGATGTTCCTCTCGATGAACTGGGCCATCGTGGCTGACATCCTGCTGtatgttGTCGTCCCCACACGGCGCTCCACCGCAGAGGCTTTCCAGATCGTTGTCTCTCACCTGCTGGGAGACGCAGGGAGTCCCTACCTCATAGGAGTAGTGTCAGACTCACTGAAGCAGGCGGACTCTTACATGTGGCAGTTCCGCTCCTTGCAGATTTCGCTCCTGCTCTGTTCTTTTGTTGCTGTGGTGGGCGGGGCCTTTTTCCTGACTACAGCCCTTTTTATTGAAGAAGACCGACACTGTGCCGAGAACTATGTTCCCTCAGTTGATGCACCAATTATTGTCCCTAAGAGAGGAAGATCCACCAAGGTGTCTGTGTCGAGTGTTTTAATTTGAGCAAATGAGGACATGGAAGAATCTAGAGAATGCTCACCTCACTGGGGGAAGTAGATGGATGTAGCTGAGCTTGACACCACTGCTGGAGTAGTGTGGGATGAATAGAGTCACTGATTGAACTTTCACCCCTTCAGGGATTTTTAGGATAatttattatgttatgtttGTTATTAACACCTTTATCATTTTTGGGAACATGACTAACCATCAGGAAGTGTGACATGGCACTTCTGAAGGACTTGCTTTCCTGGAAGAAATGTGCTGTCCAGCATTTAGCATTCTAGCATTCAGAGAAGAGCTGTGTCTCTTACTGAGGAAAGCTGAGGACTGTGGAATTATGGGAAATGGTCTGGAAGAACACATGTTCTGGGAAGGACTTTTTCTGTGAGTGAAGAAGCACAAACTGTGTTTTAAACCTCAAGCTAAAAGGAGGAGATTTTaaccttttgttttattaaccaTTTAGAGACTAAAGTAAATTAACAGATATCATTTTACTGTAATCACACTACATAATCATAATGACATGACTATGCATTGATGTGTAATGTTACATTACCTGGAAGACCTTTATACATGCTATAATATttcaacacatcacacatattaGTCAAGGTCTAGCTGATTTTTTGTTCAGATTAAAAACCAGATAGAAATCAAACACCTACCCCTCTGCTTCTGCCCAAGcgtctgatttttattattctgaatatTAAAACTTGCCCTGATTCTTAATTGAAATCGAATGCAGTCAGTGAGAAAACAGCAGATCTTCAGGATGTGCcacttaaatgaataaattcattcctttttttatttatttttttaagaagacTGTGGTGTTTGTACAAAACGTTTTACTGATCTGGAGAAACTGTAATTTGGGAAGGATCAAGTTTGACAaagcatgtttcttttttaaacattaaattaagcTTCAGctca

Function

symbol description
spns1 Predicted to enable transmembrane transporter activity. Acts upstream of or within autophagosome maturation and cellular senescence. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in yolk syncytial layer. Orthologous to human SPNS1 (sphingolipid transporter 1 (putative)).

NR:

description
protein spinster homolog 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916523.2 True 2720 mRNA 0.47 13 9032844 9044136
XM_026916525.2 False 2717 mRNA 0.46 13 9032844 9044136

Neighbor

gene id symbol gene type direction distance location
lat LOC108257259 coding downstream 812 9022546 ~ 9032032 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 49467 8973287 ~ 8983377 (-)
sez6l2 sez6l2,LOC107660756 coding downstream 79525 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 96304 8929611 ~ 8936540 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 104933 8921509 ~ 8927911 (-)
nfatc2ip NA coding upstream 1509 9045645 ~ 9049091 (-)
sgf29 sgf29 coding upstream 5637 9049773 ~ 9056443 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 60165 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 100438 9144574 ~ 9152008 (-)
LOC113527879 LOC108274494,LOC107552447 coding upstream 114240 9158376 ~ 9166233 (-)
G208153 NA non-coding downstream 1866 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 7861 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 25585 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 74633 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 76447 8955866 ~ 8956397 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 17444 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 58775 9102911 ~ 9103126 (-)
LOC117598997 NA non-coding upstream 397850 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 450487 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 702360 9746496 ~ 9748039 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 319526 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 743036 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 748252 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 765206 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1327352 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 68830 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 152360 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 365668 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 420195 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 685715 9729851 ~ 9732566 (-)

Expression


Co-expression Network