lat (LOC108257259)


Basic Information

Item Value
gene id lat
gene name LOC108257259
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9022546 ~ 9032032 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916526.2
TAACAAATGACATCTCTGAAGTTTGTTAATTTtgcttgtgtgtattgtgtactGTAAACTTAAGTGTCTACATCAAGTGTGGAAAATAATGAGACTAAATACAAAGcacaagcaaaaacaaacaaaaaaaaaaaaaagttcatagGGAGAAGGGCAGAGCTGAAGCCAGGCAGATGAATGAGCAAGAAACAACTCAGAGAGATTAGCTTAGAAACTGGAGGTGGAGGCTGCGACGACATTGAGAAAGAGCCTATGAGGAGCGAGAGgctgagcgagagagagcgggCACAggaaagataaagaaagaaaaagtttaGGGATGGCCTATTTCTCTACAACACTCATCTATGACTGTGTAAATAGACTATGAACTGTTTGGACTGATGAGAGAAAAGTGTTGAAAGTCAGACAAGAGCAACAAGAGGCTTAGGTGTAGATGAAAAGTGGGAGAACCAAGATGGTGAAACTCAGAGTGTGAACTGGTGGTGAATTTGCTCTGGTGTGTGACGCGTGACAACTGGCCTCTGGTTCGGCTCAGCACCCTGACAGGCAGATCCTACCCCGTGCTGCGACGGTGCCGGTATGGATTCCACTGCACTTTTGACTGTGGTAGGTGTGGCAGTTGTTGTGCTGTTCATCATCCTGACTGGTCTTTGCTTGAACTGCAAAGGAAACAGCCAACCAAtaTATATAAGACAACAACATGATCCACACAACAGTTATGCACCGAGCCAAGGTTTTACAGTTGTCCGCCCCTACGGAGAGACTCCTCCTTGCCCTGGCATATCAGTTCATCCTTCTCAACACCAGCACATGACTTCTCCATTGCTGACTGATGTGAGGCGGAGCTCTGCTTGTCCCTCCTCTGATGGTGGAAGCCAGAGTGATTACATCAACCAAAATGTAGTGGACAATGATGCAGTAAGCTATGAGCAGCCTCCTGAAAAGACTACAGACTATCCGGACTATCTGGACGTGTTACCAGATGACCAAAATGTGTCCCAGCAGAATCTCGCCTCTTCGTTGAATTCAGGGCAGAGTTACCAGAACATTGAAAATGATGACAACGATGATGATTCAGACAGTCAGCATTATATAAATGTCAACGAGGACAGAGTACCTGCAACTGAAACTCCTGTTGGCTCACTTGGGAGCTGCAGCAGTGACGACCAGGGCAGCTCTGACTACGTAAACGCTCCTAACCACGTTAACTTCCACCTGGGCTGATTAAAAATACCAAGACTTGAATCACCATCAGATTATACAGAAGCTTCACATTGTGTCTATACCACATATTTAAATGTGGACAAAAATGttagacagatggacagaataACCTTAAGAAATTTATTCTGTAAGAAAATAAGAAccatttaattatatttcaccATACTTTTTCCTATGTCCTGTTGACAGGATTTGCTGACAATTCCTGAGAATATTATCTTTTACTCACATATTTTCTGACTTAAAacatgagggttttttttattttacatttttattataattgcgATGAAATCAGTTGTTCTTTGGCTAttgtatgtaaaataatgtaatgcTCTGTAACTTTGTTGCCTgataactgaaataaattatgCACCACCAAA
>XM_026916527.2
AATGACATCTCTGAAGTTTGTTAATTTtgcttgtgtgtattgtgtactGTAAACTTAAGTGTCTACATCAAGTGTGGAAAATAATGAGACTAAATACAAAGcacaagcaaaaacaaacaaaaaaaaaaaaaagttcatagGGAGAAGGGCAGAGCTGAAGCCAGGCAGATGAATGAGCAAGAAACAACTCAGAGAGATTAGCTTAGAAACTGGAGGTGGAGGCTGCGACGACATTGAGAAAGAGCCTATGAGGAGCGAGAGgctgagcgagagagagcgggCACAggaaagataaagaaagaaaaagtttaGGGATGGCCTATTTCTCTACAACACTCATCTATGACTGTGTAAATAGACTATGAACTGTTTGGACTGATGAGAGAAAAGTGTTGAAAGTCAGACAAGAGCAACAAGAGGCTTAGGTGTAGATGAAAAGTGGGAGAACCAAGATGGTGAAACTCAGAGTGTGAACTGGTGGTGAATTTGCTCTGGTGTGTGACGCGTGACAACTGGCCTCTGGTTCGGCTCAGCACCCTGACAGGCAGATCCTACCCCGTGCTGCGACGGTGCCGGTATGGATTCCACTGCACTTTTGACTGTGGTAGGTGTGGCAGTTGTTGTGCTGTTCATCATCCTGACTGGTCTTTGCTTGAACTGCAAAGGAAACAGCCAACCAAtaTATATAAGACAACAACATGATCCACACAACAGTTATGCACCGAGCCAAGGTTTTACAGTTGTCCGCCCCTACGGAGAGACTCCTCCTTGCCCTGGCATATCAGTTCATCCTTCTCAACACCAGCACATGACTTCTCCATTGCTGACTGATGTGAGGCGGAGCTCTGCTTGTCCCTCCTCTGATGGTGGAAGCCAGAGTGATTACATCAACCAAAATGTGGACAATGATGCAGTAAGCTATGAGCAGCCTCCTGAAAAGACTACAGACTATCCGGACTATCTGGACGTGTTACCAGATGACCAAAATGTGTCCCAGCAGAATCTCGCCTCTTCGTTGAATTCAGGGCAGAGTTACCAGAACATTGAAAATGATGACAACGATGATGATTCAGACAGTCAGCATTATATAAATGTCAACGAGGACAGAGTACCTGCAACTGAAACTCCTGTTGGCTCACTTGGGAGCTGCAGCAGTGACGACCAGGGCAGCTCTGACTACGTAAACGCTCCTAACCACGTTAACTTCCACCTGGGCTGATTAAAAATACCAAGACTTGAATCACCATCAGATTATACAGAAGCTTCACATTGTGTCTATACCACATATTTAAATGTGGACAAAAATGttagacagatggacagaataACCTTAAGAAATTTATTCTGTAAGAAAATAAGAAccatttaattatatttcaccATACTTTTTCCTATGTCCTGTTGACAGGATTTGCTGACAATTCCTGAGAATATTATCTTTTACTCACATATTTTCTGACTTAAAacatgagggttttttttattttacatttttattataattgcgATGAAATCAGTTGTTCTTTGGCTAttgtatgtaaaataatgtaatgcTCTGTAACTTTGTTGCCTgataactgaaataaattatgCACCACCAAA

Function

NR:

description
uncharacterized protein LOC110521887 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916526.2 True 1610 mRNA 0.42 13 9022546 9032032
XM_026916527.2 False 1602 mRNA 0.42 13 9022546 9032027

Neighbor

gene id symbol gene type direction distance location
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 39169 8973287 ~ 8983377 (-)
sez6l2 sez6l2,LOC107660756 coding downstream 69227 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 86006 8929611 ~ 8936540 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 94635 8921509 ~ 8927911 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 187810 8811408 ~ 8834736 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 812 9032844 ~ 9044136 (-)
nfatc2ip NA coding upstream 13613 9045645 ~ 9049091 (-)
sgf29 sgf29 coding upstream 17741 9049773 ~ 9056443 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 72269 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 112542 9144574 ~ 9152008 (-)
G208145 NA non-coding downstream 15287 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 64335 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 66149 8955866 ~ 8956397 (-)
G208097 NA non-coding downstream 66891 8955442 ~ 8955655 (-)
G208063 NA non-coding downstream 107987 8871976 ~ 8914559 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 29548 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 70879 9102911 ~ 9103126 (-)
LOC117598997 NA non-coding upstream 409954 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 462591 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 714464 9746496 ~ 9748039 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 309228 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 732738 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 737954 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 754908 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1317054 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 80934 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 164464 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 377772 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 432299 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 697819 9729851 ~ 9732566 (-)

Expression


Co-expression Network