si:ch211-210g13.5 (si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488)


Basic Information

Item Value
gene id si:ch211-210g13.5
gene name si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6557138 ~ 6632345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916533.2
GGAAGAGCCAATCAGCTTACAACACATGTccttggactgggggaggaaactagagcacctagaggaaacccctgaagcatggggaggaGGGATCTGAACCCCCAGCTCCGGAGGTGTGATGCAACAGTgttaaccactaaaccaccatgCCACAGTAttacctttatatatatatatatacaatttgtTGTAAACTTATTGTAAATTGACAAAACACAATGCAATAGGCTATAATGTTGATAATATGTAGGCTAAGTAGGAACAGAATGTTCGTTTAGTTGGAGATGGATGATTCCGTGTAGCAGCTCTGATCTACCGGAAACACGGAAACTGCGGCTGTAATAAACTGCTGTATGGGCGCGTGCTGCCACAGAGACGCCTAATCGCGGCGCGAGCGCCatctgcgtgtgtgtttgtgtgtgtgtttgtgtgtatgtgtgtgtgttcatctgttcacgagagagagagacagagagagagagagagagagagcagcagcagaagaagagTTTCAATCAGTTTACACACATCGCCTTCATGGATGTATGAGATCTCCGTCACGCGCAGAGGCGGTTTTCGGTTCCAGAGGGAGTTTGTTTTTCCGCACCGGCTTCCCGAAAGGCTGCACGCGAAAGCTCGCCCCCCccccatcatcaccaccaccaccaccttgTGCACAATGCGcggtgtgtgtgtcggtgttgGTGTGTGTAGCTGAGGGCGGACCACCATGGCCGAGCCGGAGGCTATGGACACGGCGAGACCCGCGCGAGACTTTCCCTCCGCTGCGCCGCGTGAGAGCGatgccgctgctgctgctgctgcgggCACGCGCGCGTTCCTCAACCCGGCCACTGCTGCTGTCCTCACCGGAGGACCCGGAGCGCGCGGAGCCGAGGCGGTGCACAGTAACGGCGGACACCGGAGCCGCGACAGCTCGGCGGAGAGGAGCCAAGGAGCCGGGAACGCACCTTGCGGCATCATGAAGAACAACTCCAAGCAGCGGCAGGTGAGGAAGAAGACAGTGTCATTCAGCTCCATGCCAAGTGACCGCAAGATGAACAGCACAGCTGCCTGCATGGCCTTCATGTTGGAGGGATGCGAGATGAAAAAGGTTCGCTCCAACTCGCGCATGTACAACCGGTACTTCCTACTGGACCCAGACTTGCGCTGGCTCCGCTGGGAACCTTCAAAAAAGGATTCTGAAAAGGCTAAACTGGAGATAAAAAGTATCAAAGAGGTGCGGTTAGGGAAGAAGACCCCTGTCCTACGTAGCAACGGTCTCTCGGATCAGTTTCCAGATGAATGTGCTTTCTCAATCATTTATGGAGACAACTACGAGTCTTTGGATTTAGTGGCAAGCACAGCAGATGTGGTCAGCACCTGGGTGATGGGACTGCGCTATCTGGTTTCTTATGGGCGGCACATGGTTGGAGTGGTTGAAGCCACTCAGCCGAGCGTAAGAACCTCCTGGATTGGCTCTGTGTTCGAGTTGGCTGATGTCGAGAGGCAGGGACACATTGACCTCTTCCGTGCCACACAGATTATCAAGGGGCTTAATCCAGGCATGAGGGAGTCACGGATTGAGCTGAAGTTTAAAGAACTTCAGAAAGCCAAAGAATGCTATGGCGAGGCCATTGACCTAGACTTGTTTGTAGAGGCATATTGTGAATTGTGCACAAGACCTGAGATATTTTTCCTGCTTGTGCAGTTCTCTAGCAACAAGGAGTACCTGGATTCTAAGGACTTAATGTTGTTTGTGGAAGTGGAGCAGGGCGTAGAGGGAGTGACAGAAGAGATGTGCCGTGAAATTGTGAGAAAATATGAGCCATCAGCTGAAGGTCGTGATCACGGCTACCTATCTATTGATGGTTTTACACATTACCTCTTGTCATCTGAGTGCCACATTTTTGACCCACAGCACAAAAGCGTTTGTCAGGACATGACACAACCCCTGTCTCACTACTACATCAACTCCTCACACAATGCCTCTTTGCTGGAGGACCATTATTGGGGCTCCTCAGACATTAGCAGCTATGTCCGTGCCCTGCGCATGGGCTGCCGCAGCATAGAGGTGGTGGTTTGGGATGGCCCTGACTGTGAGCCTGTAGTCTACGTAGGCAGCTCTGTGGCCTCCCAATTGGCCTTCTCAAAAGTCCTGGATGTCATTAACCAGTATGCTTTTGAGAGCTCAGAGTATCCTCTTATCCTGTGCCTAGTGACACACTGCAGTGTGCCACAGCAGAGAGTCATGGCCCAGCACATGAAGAAGATCCTGGGGgacaaactccacacagagccTCCCAGTCCTGAGGAAAACTATCTGCCCTCACCGGAGAAACTAAAGGGCAAGATACTTCTGAAAGGGAAATGCCTTCCACCTGATATACAAGATTCTGAAGGGGAGGTGACTGATGAGGAGGAGGGGCTTGAGATGTCACGGCGCATGGTGGGAGCAGATGAGAAGGACCATCTCAATGGTTTCGGTTGCAAGAGGCTGCAACTTTGTAAAGAATTGTCAGATCTTGTCACCCTTTGCAAATCTGTCCAATTTAGAGATTTTGACTCCTCAAAGAGGGAACAGAAGCACTGGGAGATATGTTCTTTCAATGAGGTGGATGCTAATCGCTTTGCTAATGAGTACCCTGAGGACTTTGTCAGTTATAATAAGCGATTTCTATCACGGGTATACCCAACTCCCATGCGCATTGATGCCAGCAATATGAACCCACAGGACTTTTGGAAATGTGGTTGTCAGATTGTGGCTATGAATTACCAAACACCAGGCCTTATGATGGACCTCAATTTGGGTTGGTTTAGGCAAAATGGCAACTGTGGTTATGTGCTGCGCCCTGCCATAATGCGCGAGGAGGTCTCGTACTTCAGTGCCAATGCTCGTGACTCTTTGCCTGGTGTATCTGCCCAGCTCCTCCATATCAAGGTGATCAGTGGCCAAAACCTGCCAAAACCTCGAGGCTCAGCAGCAAAAGGTGATGTAGTTGAGCCATACATCTATGTAGAGATCCACGGAATCCCTGCCGATTGCGCTGAGCAGCGCACAAAGACTGTATCACAGAATGGTGACAATCCCATTTTTGATGAGAGCTTTGAGTTCCAGATCAATCTGCCTGAACTAGCAGTTTTGCGCTTCGTGGTTCTTGATGATGACTACATTGGGGATGAGTTCATTGGCCAGTACACCATACCCTTTGAGTGCCTGCAGCCTGGATATCGTCATGTACCACTGCAGTCACTTACAGGAGAGTTTTTGCCCAATACCACATTATTTGTTCACGTGGCCATTACGAACAGGCGTGGTGGGGGCAAAGCTCACAAGAGGGGTCTTTCTGTGAGGAAGGGTCGCAAGGCAAGGGAGTACACTTCAACCAAGACCACTGGGATCAAAGTGATAGATGAACTTTTCAGGGCTTCCACGCAGCCACTTCGGGAGGCAACAGATTTGCGGGAAAACGTGCAGAATGCAATGGTATCATTTAAGGAGCTATGTGGGCTGACCCCAGCAGCTAACATGAAGCAGTGTATACTGACCGTCTCATCATGGCTGCTGAACAGCGAGAGGTCTCTGCGCGTCACCGTGGACTTGAGTGAGTCCTACCCCACCATGGAGGCCCAGGGTGCTGTCCCGGAGTTACTGCGCAAAGTCCTCATGGCCTATGACACGATGATCCAGACGAGTCGTACTCTGATCGAATCAGCAGATAGTGTCTACTCCAAACTTACCCAGTCACAACGAGCAGGGTTGGATTTCCATGAAGATCTGCACCGGATCGGCGCTAAGGAGGGCCTGAAAGGTAGAAAACTGCAGAAGGCCATGGAGAGCTACGCCTGGAATATTACTGTTCTCAAGGGCCAGGCGGACTTGTTGAAGCATGCCAAATCCGAGGCGATGGACACCCTGAAGCAGATCCACTACGCTGCTCACTCCTGCGGCCTGGCCAAGAATGGAGCCTCCACTTCACCAGCCTCGCCTTTGCTGCCTCCTTACCCGCGGTCCCTCGGAGCCTTACACACCATCCCCGAGACAGACTACCCcaccacagacacaaatacCTTACACTGATATAATATACATAGAGCAAGaaacagggagaaagagaaagaggaagggaACAAGACAGGACAGGTGACCTTGGAAAGGTGGGAACAAAGCAATGTCTTCAAGGACACAGAGATAGGGGGAATAAAAGGCTGTAGAAGCATTAGAAGAAGGCAGGTCTGTACAGATTGGTCCACTTCAGCTGTCTCTTCAGCAATTGCTAGACAAGTGGAAAGCCAAGGACTCCACTTGCTCTGAGGCATCTGTAATGAGAAGGTGGAAATGGCTGCTTTATGTTACTGTATGGACTCTGGTTAAAGCACTAACCCGAGCCTCTTACACTGTAACCTAAATGCTCAAACCTAATCAGAAATGAAACCTGGTCTTTTTATCCTAGTTCTCATCTTTGAAAGTTGTATACTAGCTGTAAAGGTCAGGAATGTCCCATAAAtcttataatagtaataatattcaAAGGAAGCtcaagtaataaatataataaatcattacGTAAATCAAGGGCAGGCTGTAATAAAGGCACAGAGACGTAccatttcaaacacacacactcatattttattttattttatgtttatatttctgtcCTTTGGACTTTTATCCAGGGGTTTTAtccagtgtgtgaaagtgtgttatCTGTCTGTCCTAATACTCACCATAGTGTTCGAACTGGAACTTGGACTTCTCCTATTGAGACAGACTGAactcaaaggaaaaaaatacagcacagagACTCAGACAAGCAAATAATCGGAATTGTGAATTAATTCAGTCAATAATTTTTGAACTAATTAAAGGACAATTTACAGTCTAGCTCTGAGCAATTCACACTGTTTGTGAACAAAGTGACTATTGTAATAACTACTGTAACTATTGTGGGTAGATATATTAATATTGCAgttattttataattacagtatGTCCTGCTGTACCCATAGTCAAGATGTCACTGGAATGGAAAAGGTTAAAGGCCAAACAGGGTGAGTGGAAGGGGGGAGGGATTTTTAGAGAAAGAGTAACGGGTGTTGTGGCATCTGCAGAATAACACCTCATttgatttctttcatttattaagcccataatatattataaaagtgAAATGGCGC

Function

symbol description
si:ch211-210g13.5 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process.

NR:

description
PREDICTED: inactive phospholipase C-like protein 2

GO: NA

KEGG:

id description
K15375 PLCL1, PRIP; inactive phospholipase C-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916533.2 True 5181 mRNA 0.48 6 6557138 6632345

Neighbor

gene id symbol gene type direction distance location
hcrt hcrt coding downstream 1254 6550541 ~ 6555884 (-)
kcnh4a kcnh4,LOC107568301 coding downstream 8637 6506704 ~ 6548501 (-)
rab5c rab5c,LOC104958098 coding downstream 55668 6483671 ~ 6501470 (-)
kat2a kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008 coding downstream 75854 6468354 ~ 6481284 (-)
dhx58 dhx58 coding downstream 89241 6461123 ~ 6467897 (-)
stat3 stat3 coding upstream 101772 6734117 ~ 6764914 (-)
cavin1a ptrf coding upstream 141088 6773433 ~ 6793535 (-)
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding upstream 162009 6794354 ~ 6820369 (-)
stk17al LOC108258001 coding upstream 214550 6846895 ~ 6860907 (-)
tmem86b LOC108256452 coding upstream 256317 6888662 ~ 6890923 (-)
G206649 NA non-coding downstream 210775 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 352942 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 367212 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 603634 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 829458 5721634 ~ 5727680 (-)
G206924 NA non-coding upstream 192551 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 194023 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 469903 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 544187 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 595040 7227385 ~ 7227664 (-)
G206604 NA other downstream 362142 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 596088 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 606141 5940862 ~ 5950997 (-)
G206282 NA other downstream 715661 5841137 ~ 5841477 (-)
G206236 NA other downstream 800405 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 13713 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 686258 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 793372 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 927422 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1617540 8249885 ~ 8267638 (-)

Expression


Co-expression Network