rac3a (rac3,rac3a,rac3b,LOC106610298,LOC108436959,LOC100712409)


Basic Information

Item Value
gene id rac3a
gene name rac3,rac3a,rac3b,LOC106610298,LOC108436959,LOC100712409
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3658456 ~ 3669302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916575.2
tccaatctggcaaccgtGTTCATGCTACACTACAGAGGCTGCTCTCGACATCTCTCCACCATCTCACATCCCTGCTGGAACATCGCACTTCTGTGCATTTAAACCGTCTTCGCTTTCCAAATGCAAGCCATCAAATGCGTCGTGGTGGGCGATGGagccGTGGGTAAGACATGCCTGCTCATCAGCTACACCACCAACGCTTTCCCGGGAGAATACATCCCTACAGTGTTTGATAATTACTCTGCCAATGTGATGGTGGATGGGAAACCTGTAAACTTGGGATTATGGGATACAGCGGGGCAGGAGGACTACGACCGTCTCCGACCTCTCTCCTACCCTCAGACGgatgtgtttttgatctGCTTCTCACTGGTGAGCCCGGCTTCGTTCGAAAATGTCAGAGCAAAGtgGTACCCTGAAGTACGTCACCACTGTCCCAACACACCCATCATTCTGGTGGGAACCAAGCTGGATCTGCGGGACGATAAGGACACCATCGAGCGCCTGAGGGACAAAAAGTTGTCCCCTATCACCTATCCTCAGGGTCTCGCTATGGCCAGAGAGATCGGAGCAGTGAAGTATCTGGAGTGTTCGGCTCTGACTCAGAGAGGGCTGAAGACGGTGTTCGACGAGGCCATCCGCGCCGTCCTCTGCCCTCCGCCCGTCAAGAAGAGAGGGAAGAAGtgtacagtgttttaaaaaaagaacacacacccacacacacacacactcacacagagtgCAGAGTGTTTCACTTCAACACACAGTCATCATACTGAGTTCCTACTGGCCGATTTGTTGAGACGGAGTAAAAACGTGACAGGtgaaacatcacacactggaGTTTTAGATATAGCGCAGCGGGATAAAAATAGCGAAAGGCACAACACGGAATCGTGCCAAATTCCCTCTCATCCCTATTTCTGAACTCGATTGCCTTAATTGGTGCTTAATTTGTGGTAATGAGAAGGTCCTTGATATACACACCTTGCATGCGCTAATATTTGGttttgtgatatgatatttaacACACAATATTTGCATTGTggacaaattaaattaaactattatttCAAGGCTAAGTGTCGCAAATGTGTCCATAATGAGTCCAAAAATGAGGAAAAGATTGTAGaaatttggataaaaaaaaccacacaaattaTAAAACGTAACGGAAAGTTAGACAATTGTTgtgctaataaaaaaattaatactggCGCGCACACAGGTGTTTCTGAGttgagtgggcggagcttaagttaTATTCGATGATCCAATTGCAAACGTGATCACATGACATCACAATAAAAGTTTATCTAACCTAGGCTAGCTTACTATCACAGGCTAACTCTACTGGTTTTGATTACACTATAAAATACCTAGCGTAAGTATGTCTTGGTTAGCTataaaaatttgtaattatGTCTTGGTTAGCTATGTAACATCAGGTAGCTACTGCTGGATTGACAAAGTTTTTAGCAGTGTTTACATAACTGATAAAATGTTATATTGTGTCTATAAATCCGTATGGAAAAGAAGAAACTTTAAAAATAGTGATGTCTTTTTATAAAGTGTGTGATCAGCTAGTTAAATACGCTCCGCCTACGTTGACTTAGACACGCCTGTCACTCACTAAAATCAGGACATGCAAAtgtccaatacacacacactgtcccctGTACACATTTCCTGAATTCCTCTGTGGAAATTTTCCTCTTCGCTAGGGcatcgttttgtttttttcttccttattgATCTGTGAATGTGTCTGAAGTCTGTGTAAATAGATATTGTGAATAACTTGAGGATCGAATCGACGCCGTCTCTTGTTCTTGACTGTAAagtaaatctaaaataaaaatatcgcCTACTGAATACAGCTCTTTTTAATTTCGGTGTTTGTGTGACTACTGTATGTGATGGCGTTTTACAGcacaagaaaaatgaaagagtgattactaaaatgtgtatatttaaagTCAGTCGGTGTCTGAAGCTCAGCCGGGTATcaaatttacagaaaaactttggccaaaaataaaatatgcacagTTATTTCCCCTTAGCGCAAATGTagctgtgttttctttcattttgcactggagctacaaaggCTAATCCACTAACAAAGTAATCTGGGTGTAGTTTAGTGTTGTGAAAACTGCTTGGATCACACACTGGCCTCAAAATGACTATGAAGAGTTGTTTAGTATGTGAAATAGAtttgctgatgtggtttctgacgCCATATTACACACTGTACGCTATAAAAATGAGTGAAAGGATGTCACAGAGCTAACAACAGTCGGCCATTTTGAAAGAggaatcttatttttttcctggcaTTTGCGAATTTGTGCTTTAAACATGATACACTTGCTGCTCAAGTGATTAAAGTTGTGAGGACGATGTTGCCAGGCAACAGGGAAACATGGATGCTGATTccaagctagctaatgactaaTGAGTCATGACTGACTAGCTAGCAAGTCGTTGGTAAGTCTTTTATGTGGACAATGTTAAGTCAGAGTGACtgtgaaaatgagtaaaaaatgtcAGGAATGTCAACTTTTACCTCGGATTTGTTGGTATATTATTAAGAAAATGCTCCAAACTTCTAAAATGACACTTTTGTTAGTTATCTCCATTAGcgttgtagctccagtgcaaaactaaagcaaACATCAGACCCTCGACATCTTGGCTGATTTGGCGTGACATGGAAACTGTGTACATTTCACTTTTAGccaaaattttcttttttgcaagttctttacattacagtattgtatacatatttaattaatgtctctttttttgtaaactGGAACTTTTTTTCCATCCTTTGAATTTTGCtccatattttacagtatacTAGCTGAAATGTGCCATTGTGGATTGTTTTTGTGTGGCTAGCATGCCAAATTTTCAACTTTAGACAAGATATGTGTCTAACTTTGTTTCTACTTTTTTGCCTTTTGATTTTACTGAAAGTACcatttgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagcgcaaaaCTGTtagagatgtaaaaaaaaaaaaaaagaataccaTGTGTTTTTCGGTGTTATGACATGATGGTGGTTATCCGCCTTAACCTTACAGTTGGCTTCTGTAGACACAATAACAATCAGAACCCCTTTTGAATTGTTACTAAAATGAACCTCGTGTGTATGATATGAGTTTAAAACGTACGCATTAATAAAAGTGAGTCCTTGAATGTA

Function

symbol description
rac3a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in blastomere; hatching gland; nervous system; somite; and trigeminal placode. Orthologous to human RAC3 (Rac family small GTPase 3).
rac3b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within actomyosin structure organization and rhombomere boundary formation. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in rhombomere. Orthologous to human RAC3 (Rac family small GTPase 3).
rac3 Enables GTPase activity and calcium-dependent protein binding activity. Involved in several processes, including Wnt signaling pathway; cell projection assembly; and positive regulation of cell adhesion. Located in several cellular components, including growth cone; neuronal cell body; and perinuclear region of cytoplasm. Part of filamentous actin.

NR:

description
ras-related C3 botulinum toxin substrate 3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916575.2 True 3281 mRNA 0.40 6 3658456 3669302

Neighbor

gene id symbol gene type direction distance location
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 1169 3641541 ~ 3657287 (-)
csnk1da csnk1d,LOC108259482,LOC103024472,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC108435268,LOC107566590 coding downstream 35369 3587950 ~ 3623087 (-)
si:dkeyp-72e1.9 LOC108255663 coding downstream 133351 3502035 ~ 3525105 (-)
pdxdc1 pdxdc1 coding downstream 191050 3437559 ~ 3467406 (-)
gspt1l gspt1l,LOC100304847,LOC108438004,LOC107721494,LOC107654506,LOC106529451,LOC104930119 coding downstream 223333 3416399 ~ 3435123 (-)
prkar1aa prkar1a,LOC107654492,LOC107721504,LOC107708993,LOC108274040,LOC103038385,LOC107693667 coding upstream 3678 3672980 ~ 3683323 (-)
LOC113528389 tlr-20a coding upstream 87683 3756985 ~ 3760988 (-)
zgc:193811 LOC108259531 coding upstream 199277 3868579 ~ 3879880 (-)
lin7b lin7b,LOC107730776 coding upstream 212826 3882128 ~ 3888471 (-)
snrnp70 snrnp70 coding upstream 221872 3891174 ~ 3901444 (-)
G205040 dus1l,LOC102781131 non-coding downstream 27073 3630694 ~ 3631383 (-)
G205030 NA non-coding downstream 38337 3617171 ~ 3620119 (-)
G205038 NA non-coding downstream 56217 3601002 ~ 3602239 (-)
G204664 NA non-coding downstream 484179 3171262 ~ 3174277 (-)
G204524 NA non-coding downstream 625228 3028815 ~ 3033228 (-)
G205063 NA non-coding upstream 34981 3704283 ~ 3738959 (-)
G205145 NA non-coding upstream 279547 3948849 ~ 3957710 (-)
LOC117598833 NA non-coding upstream 321104 3990406 ~ 3990917 (-)
G205169 gfap,LOC107658466,LOC107729544 non-coding upstream 364594 4033896 ~ 4035077 (-)
G205165 NA non-coding upstream 433054 4102356 ~ 4104225 (-)
nde1 nde1 other downstream 244689 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 580438 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 618804 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 1120345 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 1313544 2331676 ~ 2344912 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 99553 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 371179 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 423611 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1053115 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 1420034 5089336 ~ 5091922 (-)

Expression


Co-expression Network