LOC113528185 (LOC108275528,LOC103031371)


Basic Information

Item Value
gene id LOC113528185
gene name LOC108275528,LOC103031371
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12147496 ~ 12153883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916587.2
ATGAGCAGACGCCAATCAAAAACCAACTCAGACACAGACATGTGTAACTCAGTTAGTGTGTTTGACATAGAACCAGAGGAGAAGGAGACCATAATCCACCGCttggtcagtgtgtttcagcCCTATATCCAACCCTGTCTTGCTGAACTGGTGGGCTCAGCACTTTTCATCTTCACTGGCTGCATGTCCGTCATAGAGAATCCGCAGGACACGGGGAGTCTGCAGCCAGCTCTAGCACATGGCCTAGCACTGGGCATCGTCATAGCATTGTTTGGAGAGATCAGTGGAGGTCACTTCAACCCcgctgtctctgtgtctgtttaccTGATCGGGGGTCTTAATGTCATCTTACTGATACCGTATATTATGGCACAACTGTGTGGTGGACTCATTGGAGCAGGTCTGGCTAAAAGTATCTCACTACCACATAATTACTACAATGCATCTGGTGGTGCGTTTAACACAGTCCAAGAGCAAGCTCAGATTGAGCCTGCTGTTATAGCTGAGATGGTAATGACGCTGTTCCTGACCATGTCAGTGTGTATGGGAGCGGTGAATGGCAAGACACGTTCCTTACTAGCTCCATTCTGTATTGGACTGACAGTTGCGGCTGATATCTTAGCGGGAGGAGCAGTCTCTGGAGCATGCATGAACCCAGCACGTGCTTTCGGACCAGCAGCAGTGGCAAATTACTGGACATATCACTGGATCTACTGGGTCGGGCCCATGGCTGGTGCACTGCTCACTGCTACTCTCATTAGGTTGATGCTGGGTGATGAGAAGATTAGAGTGATACTGAAGTAA

Function

GO: NA

KEGG:

id description
K09869 AQP8; aquaporin-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916587.2 True 804 mRNA 0.49 5 12147496 12153883

Neighbor

gene id symbol gene type direction distance location
tnpo2 tnpo2,LOC108432206 coding downstream 114738 12015201 ~ 12032758 (-)
LOC113528656 NA coding downstream 121924 12025502 ~ 12025572 (-)
tmem104 tmem104,LOC107568246 coding downstream 134520 11963695 ~ 12012976 (-)
rln3a LOC108258150 coding downstream 319389 11826285 ~ 11828107 (-)
il12rb2l NA coding downstream 321717 11810207 ~ 11825779 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 36189 12190072 ~ 12200474 (-)
grid2ipa grid2ipa,LOC108432200,LOC107583579,LOC107758114,LOC107670677,LOC107728614,LOC107689997,LOC107559228 coding upstream 48085 12201968 ~ 12236027 (-)
e4f1 e4f1 coding upstream 85253 12239136 ~ 12248090 (-)
zgc:113333 NA coding upstream 96801 12250684 ~ 12261251 (-)
hagh haghl,LOC108432196,LOC104918824,LOC103393077,LOC101076411 coding upstream 118287 12272170 ~ 12278591 (-)
G209868 NA non-coding downstream 11577 12135508 ~ 12135919 (-)
G209835 NA non-coding downstream 62794 12083736 ~ 12084702 (-)
G209839 NA non-coding downstream 70423 12076672 ~ 12077073 (-)
G209832 NA non-coding downstream 76894 12070296 ~ 12070602 (-)
G209830 NA non-coding downstream 78316 12068813 ~ 12069180 (-)
G209946 NA non-coding upstream 4187 12158070 ~ 12159112 (-)
G209951 NA non-coding upstream 19571 12173454 ~ 12174407 (-)
G209961 NA non-coding upstream 83091 12236974 ~ 12237192 (-)
G209984 NA non-coding upstream 179571 12333454 ~ 12333662 (-)
LOC117598772 NA non-coding upstream 292578 12446461 ~ 12463878 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 446324 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 499499 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1676978 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2414930 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2673018 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 143893 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 179971 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 392450 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1236733 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1241583 13395466 ~ 13399225 (-)

Expression


Co-expression Network