cbx8a (cbx8,LOC108261002,LOC107085518)


Basic Information

Item Value
gene id cbx8a
gene name cbx8,LOC108261002,LOC107085518
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12129591 ~ 12132297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916600.2
GTGATGACGTCTCTTCAACGAGTATTATGGGCTGTCCGTGATCATACTGGCCGAGGTTGTGGCGGAGAAAAAAACCGTGGGACAGAAGTAAACATGGAGCTCTCCGCCGTCGGGGAGAGGGTTTTCGCGGCCGAATCCATCATCAAGCGACGCATAAGAAGAGGGCGGATGGAGTATCTGGTGAAATGGAAAGGCTGGTCTCAGAAATACAGCACCTGGGAGCCAGAGGAAAATATTCTGGATGAACGTCTGTTCGCTGCTTTCGAGGAGAGAGAGCGGGAGAGAGAATTATATGGGCCTAAAAAGAGAGGACCGAAACCAGAAACTTTCTTATTGAAGgCGAAGGCTAAAGCCAAAGCCAAAAGTGACGAATTCCGAAGAGAAATGTCACGAGAGATTAGAGTTTCGTTCCCCGTCGCAGAACCAGTTGTCACACCTCGAGCTCGAGAAGGGCTAAGAACAGTCGTACCTACTATCTTCCCTCCAAGCACTGTCAACAGGGGAGAAAGTGTCCGTGTTCGATCGCCAGAGCCAGAGAGGAGATCTCGACCTCCTGTATCTCCAACACACGCCCTTATGGACGCAGTTAATACACCAAAAAAGAGAGGACCAAAACCAAAGTTGCGTTTCCCTGTTAGTGCCCCTAGCAGCAGTTGTTCTCCCACTGATCCTGTTAAGAGGAGAGCAGATGAACATTTATCTTTTATTCCAACAAAAATTTCCAGGCCTGCTCATCATTCAGGAGAAACATCCAACTGCAGTGTTATCCAGTTAACTCAGAGGTTTCAAGCAGAAAGCGGTAAGCCTCCAAAACAGCTCGCTTGTGGATCAAGTAGCGGCGTTGCTCTTGGAGGCACTCTGCGAAAAACAGCTCATGATATTCTGGGACATGGCACAAAGCACTTCTCAAGTGGCCCATCAGTTCCACACACCAAGAGGAAACATCTTTCCAAGAACAGTTTATTTCAGCCTGATGACCTGCCCATCGATCACTTGTCTCCGAAATACCCTGTACCACAGAATCATGGAGATGAAGACGAGGAATCCTGGACTCCGTGCCTGAATAACATGGAGAAAATTATCGTGACAGATATAACCAGTAACTCATTGACTGTAACGATTAAGGAGAGCTCCACAGACCAAGGCTTCTTCAAAGAACAGAGATGACTTGTGTACTTCTTGGTCAGCTGATGAAATTGCTATGAAATATTATCTATCCATTAACAGCCTATGTTTCTATCATTTCTAGACTAACTGTACAGCACGTCTTGCaatctatatgtaaatatgtaacaaaaagaaaatagtcAGCATATACATTTCCATTCATATTTTCTATGAAaatgaagtttatttttttacttcccAAGGTATCTGTAATTGTCCAGAGATCAGTTTGTATCAGTTTGCCTATGTCAGCTGTAGTGCGGGTGTAAAGGCGCACAATGTCGCCTAAACGCACTGCATTGACTACGTGCGAAACTGCATACTAGCGTACTAGATAGTAAACCCGCCGTGCAGCGCGTGCTGTGCTTATATACTGCGTAGTACGCTAGTATGGATTTCGCGTGTACAGGCGCTGGGCCTCTTTCAACGCACGGCACCTTTTATCCAGGGGGACCAGTAAGATCCTCCTGTATTATCCCCTGTGTTCTTTATTGTATTGTGTGAATAGAGTTTGTGGATATTTGAAGGTCTAGCATTGTCGTGTATTAAAGCACaaagtaaatatgaatataaatgctGACCAAACCA

Function

symbol description
cbx8 Enables methylated histone binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in chromatin and nucleoplasm. Part of PRC1 complex. Biomarker of esophagus squamous cell carcinoma and glioblastoma.

NR:

description
PREDICTED: chromobox protein homolog 8-like

GO: NA

KEGG:

id description
K11455 CBX8, PC3; chromobox protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916600.2 True 1755 mRNA 0.45 5 12129591 12132297

Neighbor

gene id symbol gene type direction distance location
cbx4 cbx4,LOC108260285 coding upstream 7455 12116439 ~ 12122136 (+)
gaa gaa,LOC106601771 coding upstream 84087 12033886 ~ 12045504 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 209928 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 279255 11830043 ~ 11850336 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding upstream 386518 11739620 ~ 11743073 (+)
narfl narfl,LOC106606697 coding downstream 132408 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 154923 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 208653 12340950 ~ 12356527 (+)
kdelr2a erd22,kdelr2a,LOC108432184,LOC107670681,LOC107555655,LOC107728665 coding downstream 253678 12385975 ~ 12389435 (+)
spag9a LOC108257234,LOC108432181 coding downstream 264207 12396504 ~ 12435649 (+)
G209798 NA non-coding upstream 67809 12061569 ~ 12061782 (+)
G209775 NA non-coding upstream 108459 12019863 ~ 12021132 (+)
LOC113528367 NA non-coding upstream 306681 11808261 ~ 11822910 (+)
G209410 NA non-coding upstream 420655 11708728 ~ 11708936 (+)
G209392 NA non-coding upstream 495110 11633912 ~ 11634481 (+)
G209863 NA non-coding downstream 963 12133260 ~ 12133471 (+)
G209884 NA non-coding downstream 68941 12201238 ~ 12202277 (+)
G209886 NA non-coding downstream 75939 12208236 ~ 12208486 (+)
G209887 NA non-coding downstream 76589 12208886 ~ 12209124 (+)
G209894 NA non-coding downstream 87004 12219301 ~ 12219553 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 43533 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 551768 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 741571 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 1348132 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 2141818 9944306 ~ 9987773 (+)
LOC113528416 LOC108275780 other downstream 2972 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 26406 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 235269 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1303084 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 1331788 13464085 ~ 13493942 (+)

Expression


Co-expression Network