LOC113528207


Basic Information

Item Value
gene id LOC113528207
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6205540 ~ 6212540 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916615.2
aaaatgtccagGAAAGTGAAGAACAGGAACCTGCAGGTGTCCTGCGAAGAGCGCATCCTGAAGGACTGCCATCAGATGTACACGGATACAGACAGCGGATTAATAGCAATAGCTCAGTCTGTTGGTGTGAATTTGCTGCCTCCCAGGACGAAGATCACCGTGATGCTGATGGGGAGCCACTCAGCTGGAAAAAGCTCCTTCATCGACTGGTATGTAGAAGAGCACATCAAAAACACTGGAGCTGCGACCGAGACGCAGGGCTTCACATTTGTTACTAGTGGGTGCAAGAGAGAGTCTCTTACGGGTAATGCGACCTTCCAGTTGTATCCACACTTTAAGCCACTTCAGGAAATTAAAGgtGTGTCTGAATACGTTCACACTGAGATCTGCGCTTCTCGGCAGAAGTGTTTCAGTTTGGTGACTTTTGTGGACACTCCTGGACTGGTGGACGGTGATATGAACTATCCCTTTGATGTGGACCAGGCCATCCTTTCGCTAGGTGATGTGTGCGATTTGATCCTGGTCTTCTTCGACCCAATGGGACAGACTCTGTGCAAACGCACACTCAACATCGTGGAGCAACTGAACGAAAGGCAGGGAGATCGACTCCGCTTTTACCTCAGCAAAGCTGACGAGGCTGGaggagagtcagacagacagAGAGTGAAGATGCAGATTATGCAGGAGTTGTGTAAACGTCCAGGACTCAACAAGTGTGGGTTTGACATGCCTAGCATCTATATCCCCAATCCCAACAAGCCCAGTCGATGTGTCAATCAGATCAAGGAGGTGTGTCACACCATACAGAAAACCACCGAACAGACAGTGCAGAACACACTCAACATGCTGGAGAAGGACTGCGAGTTCATCAGTGAAGCTGTTACTGATACTCTCAACAACGACCGGCAGTGTTGCAAGGAGAACTGGAGTGCTTGCAGTTTGAGCTGTGGCCTGGGCATGCTGGGCTTCAGTGTGCTGCTGCTCTTTACCCTGATGCTGGGCATCCTCTACCCTGAGGTGCTGGAGCTGGCACTGGGTGCTTATGGCACTGAGACACTGTTGCTGTATCTGGCTCCAGCCATGAGGGTGCTTGATTCTGTCCCAGTGCAATTTCAACTCATTATTTGTGGTTTCTTGATGCAACTCTCTGTAATTTTCCTCATCCTGGCTTGCCTCCTCTTTCACACTAAGCCGACTCTGTCTGGAAAACAAAAGATAAAGTTGCAGGAAAAACTGGAGTACATGCAGGAGGTGGTCAAATCTAAAaagAAGAAGCTGTATGAGGAGTACCTCAGAACGTTGGTGATCAGGATAGAGCCTAAAGTTTTGGGTTGAAGATCTACTGGAGCCATGAATGGAAAGAACAATGAACAAGTAATAGGAAGGAAATCAGTAACACACCACTAAACTTCCCTGCATTATAGAGGAggagaaataaatttataaactgTTTGTCTCTCATTACAATGCCAACACAGTGTGTTGCTGAAGGTTACTATTAGTTT

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916615.2 True 1505 mRNA 0.48 12 6205540 6212540

Neighbor

gene id symbol gene type direction distance location
LOC113527922 si:ch211-11k18.4,ehd3,LOC108260452,LOC108411040,LOC103375184 coding upstream 1331 6197640 ~ 6204209 (+)
gdpd3a LOC108256211,LOC103040887,LOC108411042 coding upstream 17279 6180799 ~ 6188261 (+)
cln3 cln3 coding upstream 57922 6138100 ~ 6147618 (+)
zgc:100868 NA coding upstream 76729 6119493 ~ 6128811 (+)
LOC113528511 NA coding upstream 179701 6024296 ~ 6025839 (+)
rabep2 rabep2 coding downstream 2746 6215286 ~ 6222046 (+)
hsd17b1 hsd17b1 coding downstream 51659 6264199 ~ 6267998 (+)
si:ch73-141c7.1 LOC108258527 coding downstream 58595 6271135 ~ 6276711 (+)
nkiras2 nkiras2,LOC107687022,LOC107590605,LOC107729182,LOC107755561 coding downstream 130723 6343263 ~ 6346384 (+)
aspdh aspdh coding downstream 680691 6893231 ~ 6898472 (+)
G206339 plcd3,plcd3a,LOC108432051,LOC107674588,LOC107581738 non-coding upstream 213468 5990607 ~ 5992072 (+)
G206291 NA non-coding upstream 241459 5937248 ~ 5964081 (+)
G206301 LOC108257121 non-coding upstream 261108 5940879 ~ 5944432 (+)
G206289 NA non-coding upstream 280355 5918445 ~ 5925185 (+)
LOC117599005 NA non-coding upstream 335734 5868862 ~ 5869806 (+)
G206540 NA non-coding downstream 271139 6483679 ~ 6509229 (+)
G206722 hcrt non-coding downstream 338351 6550891 ~ 6551152 (+)
G206801 NA non-coding downstream 476916 6689456 ~ 6737847 (+)
G206835 ptrf non-coding downstream 518145 6730685 ~ 6810353 (+)
G206942 NA non-coding downstream 686302 6898842 ~ 6931386 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 10576 6180096 ~ 6194964 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 30174 6160334 ~ 6175366 (+)
si:ch211-198p11.6 LOC108276725 other upstream 70968 6130780 ~ 6134572 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other upstream 307340 5889552 ~ 5898200 (+)
G206166 NA other upstream 544692 5657612 ~ 5660848 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other downstream 39804 6252344 ~ 6260857 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other downstream 871901 7084441 ~ 7102215 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other downstream 895638 7108178 ~ 7131967 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 1096667 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 1640651 7853191 ~ 7853509 (+)

Expression


Co-expression Network