LOC113528209 (ern1,LOC107555087)


Basic Information

Item Value
gene id LOC113528209
gene name ern1,LOC107555087
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15472866 ~ 15501425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916617.2
GCGCATGCGTACTGTCGGGAAATTGTATTCGGCTTAGTAGTCACAGCTGGCGAGGAGTAAACCAAGCAGCATGGAAGATATTTCGCCTTTATAGTTAGCATCGAAGTAATTTtcgggaaaaaacaacaacaacaaatacataCTGAACCGTCGAAGTGTTGAATTTGTTCTATGTGAGCTGGTTTAGCGTTGTGGAAGATGGGCTGGGGTGTGTGTAGCAGGGCCCTTGTGTGGTGCATTTATACAGCGCTGTTCAGTACCCTGCTGTTAAAGGGCCACTGCAGTCGCAGCAGCGTCTCCCTGCCTGAGAGTTTACTCTTTGTTTCCACTCTGGATGGAAACCTGCACGCCGTCAGCAAGCGCTCTGGCTCTATTAAATGGACACTTAAGGAAGATCCTGTTCTTCAGGTCCCAACCCATGTGGCTGAacCTGCATTTCTACCTGACCCTAATGATGGAAGCCTGTACTCACTAGGAGGGAAGAACAATGAGGGACTGACGAAACTGCCCTTCACCATTCCTGAGCTGGTCCAGGCTTCCCCTTGCCGCAGTTCTGATGGAATCCTTTACATGGGTAAAAAACAGGACGTGTGGTATGTGGTAGATCTGCTGACAGGAGAAAAGCAGCAGACTCTCACCTCCTCTTTTGCTGAGACACTGTGCGCATCGTCGTCGCTACTTTACCTAGGTCGCACAGagtaCACTATCACCATGTATGACACCAAGAGCCGAGAACTGCGGTGGAACGCCACTTACTCTGATTATGCATCCACACTTCCGGATGATGATACCAAATACAAGATGGCCCACTTTGTTTCAAATGGCGATGGCCTCGTTGTAACCGTAGACAGTGAGACAGGCGCAGTGCAGTGGGTGCAGAACTATGACTCTCCCGTGGTGGCTGTGTACATGTGGCAGCGTGAGGGCCTGCGCAAGGTGCCACACACCAACGTAGCCGTGGAGACACTGCGCTACCTCACCTTCACCTCAGGCCAGGTGGGACGTATCACGCAGTGGAAGTATCCTTTCCCTCAAGAGAGGAAGCTCGAGGACAAACTCATGTCCACCCTGTATGTGGGAAAGTACTCCACAAGCCTCTATGCATCTCCCTCTCTGGTGCATGATGGAGTTACTGTTGTGCCACGTGGTAGCACTTTTCCAATGTTGGAGGGTCCTAGTAGCCAGGAGGGCAATGTGGAGGAGGACCAAGAGTGTGTCATCACGCCCAGCACCAGTGTCAAATTCAATGCGGCCCTGAAGGAGCGGAACCGTGTCAACTACATGAGGAACTACCTCCTACTTATAGGTCATCACGAGACTCCGCCTGAGGCTCATAAGAAGATTCTGGAAAAATTTCCGGATGGTTTTCCTCGTCAGCACAGCAACGTCATCCCTCCTGCTACAGAGCAAACTATCGAGGAGAAAGTGAATGAAAGTGGGATGGAGGACAGCAGCCCCTTGCCCCCTCCTGTCCATCCTCTCCAGGAAAAACAGCCTCGCCCACTCCGCTCTGAAGCACCTGTGGACTCCATTCTCAAAGACATGGCCACCATTATCTTCAGCACTTTCCTCCTGGCTGGCTGGGTAGCCTTTATCATCACTTACcccaagAGCATGCAGAAGCAACAGCAGCTGCAGCACCAACAGTTCCAGCGACAAATGGAAGAGAAGTTGGAGctcctacagaaacagcagcTGCTTTTCCAGCCACCTGGCGACCTGCTGCCTGACGGTGATTTCCTGGAGGTGGCACGTGGCCGTGCTGAGAGCTCCGGCCAAAGCAGCGCTAATGCCACACCACGTGCTTCCAATCATTCCAACCTGTCTCATTCCGAACCAGGGGGTTCTGCAGCTGAGCATGACGATGGAGAGGACGAGTCCAGCATTGTTCGAGTTGGAAACATCACCTTTAATCCTAGGAATGTTCTGGGACATGGTGCCGAGGGCACCATCGTATACAGGGGTCATTTTGATAACCGCCAAGTGGCAGTGAAGAGAATTCTCCCAGAATGCTTCAGCTTTGCAGACCGGGAGGTGCAGCTGCTGCGTGAGTCAGACGAGCACCCCAATGTCATCCGCTACTTTTGCACGGAGCGTGACCGCCAGTTCCAGTACATCGCTATAGAGCTGTGTAGCGCAACTCTGCAGGAGTACGTAGAGCAGAAGGATTTTAATCGCCATGGGCTGGAACCAGTGACCTTGCTGCAGCAAACCATGTCTGGACTGGCACATCTGCATTCGCTCAATATAGTTCACAGAGATCTGAAGCCACACAACATCCTGGTATCTATGCCGAATGCCCATGGGCGTGTTCGTGCCATGATCTCGGACTTTGGCCTGTGTAAGAAGCTGGCTGCAGGCAGACACAGTTTCAGCAGGAGGTCTGGTGTTCCTGGCACAGAGGGATGGATAGCGCCTGAAGTGCTTAGTGAAGATGCCAAGCACAACCCAACGTGCAAAGTGGACATCTTTTCTGCCGGCTGTGTGTTTTACTACGTGGTATCACAGGGCTGTCATCCATTTGGAAAGTCCCTGCAGCGGCAAGCCAACATTCTCCTGGGAGTCTATTCACTGGACCACTTGCAGCCAGACAAGCATGAAGACATTGTGGCCATGAACCTGATAGAGCAGATGCTGAGTGTGGAGCCCGAGAAGAGGCCATCAGCAGAACGAGTGCTCAAACATCCCTTTTTCTGGAGCCTTGAAAAACAGCTGCAGTTCTTCCAGGACGTGAGTGACCGGATTGAGAAGGAGCCACTAGATGGACCAATCGTGAGGCAGTTGGAAAGAGGGGGGCGTGCCGTGGTGAAAGGAGACTGGAGGGAGCATATCACAGTGCCTTTACAAACGGATCTCCGCAAATTTCGCTCCTACAAAGGCGGCTCTGTTCGAGATCTTCTGCGTGCCATGAGAAACAAGaagCACCATTACCGTGAGTTACCTGAGGAGGTTCGGGAGACACTGGGCTCCATTCCAGATGACTTTATCTTCTACTTCACGTCCCGCTTTCCCCAGCTGCTGCTCCACACACATGTGGCCATGCGGTTGTGTGCCCATGAACGCCCATTTCTGCCCTACTACCACAGCTCAGAGCTGCCTTCACGGACCATTACCACACAGCCTGAGCCCAAACCCCCAGAGCCAAGTCAAAAGGACCTAtcttcattcacacattcagaacccacagaactgccattAGACTCAGACTTTCCCCCACCATCAGATTCTCCAATACTGCCTGAACATACTCAACATGTGCAGCAGGAGCAAAATGCCTTCTCCATGCCATCCAGACAAGAAGATACCGCGCTGTAGACGAAAGGGGTCGGTGGATTTGCTATTCTGAATGGACACATCTCTCTGAGTTGGTGCAGTCCAGGTCTGCAGTGCCTGAGCTGTGTTACTTACATGAGGTGCCATCCCATATCAAAGTGCCTTACCCGTTTAAGACAAAATGGCTCTTTTCAGAGCTGCCTAGTTCCTGGTGAAGCTAGGCTAGTCTGGATTTGATCCTGTTATTTGGACCATGGTATTATATTAAGAagctgaaggttttttttattattattattgcaactCTTTTGTAAAGGCTGAAAACTGTGATGCTTGCACACGCATGAGGCAAGGACTATTTGTATTGAACTCTTAAAGTTGTCAAGAGTAATTCTACTGTGCAATGTCAGTGAAACTCAGTCAGAGACCTTGctgtcaaatatatatatatatatttttgtacatatCTTAATTGGTGATAATCCGTCAGCGTGGCCAGTGTGCCTTTTTAATCTCGCTGTTCTGTGTCTTGGCTGTGTGAAGTCAGAGGGGGGGATAACTGTTCCTGCCTGTTGCTATGCTGCTGCTGACCTCAATTGTATCCAAAGGGAACTGGAATATTCATGTTATGATATTCATTTCCGTTTTTATCATCATAGCTTTTATCATCAGTTGTCATTGCAAATTATGTTGTACAGTTTATATGTCGACACATTACATAATTGatataaacaaaatcaaatgtaatttttaattttatctatggctgttaaaacattttagacAGAAATTTTAATAGGTGACATTTGCAAAAACAATTATCAGGCCTGAAGAATATAGATCACATATCATAAATTGAGTCAAGTAGTCAGATTAGTTCTCATTCTCTCCCCTGCCATTGAATGTATGCACACTTGGGCCACTTTCAAGCACAGATTAAATGAATGCAGGTCCAAATTTAATTGTAGACCATATTCTCTCGGTTTTAATGCATTAAATGGGAACAATAGCCACACATTTAACTTTATATGTAGAAATTTGTTTGTGAATGTCCATGAGGggcatattaatttatttaattttctttattttcaacaaGTTGAAAAAATTCCAAGAAcatgatttaatcttttttttattgttaaaagctGCTATTGTACAATGCTAAACTCCTAATAAAGCATTACAACCTAA

Function

symbol description
ern1 Predicted to enable endoribonuclease activity; protein serine/threonine kinase activity; and unfolded protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be part of IRE1-TRAF2-ASK1 complex. Is expressed in brain. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human ERN1 (endoplasmic reticulum to nucleus signaling 1).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0005524 ATP binding molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916617.2 True 4467 mRNA 0.48 22 15472866 15501425

Neighbor

gene id symbol gene type direction distance location
tex2 LOC108278257,LOC108437163 coding upstream 3460 15437391 ~ 15469406 (+)
axin2 LOC108255292,LOC108437161 coding upstream 100683 15343257 ~ 15372183 (+)
cep112 cep112 coding upstream 129919 15208106 ~ 15342947 (+)
cyth3b cyth3,LOC108258062,LOC108437157,LOC107556600,LOC101486233,LOC103143117,LOC107664323,LOC107571178 coding upstream 435819 15000870 ~ 15037047 (+)
stk19 stk19 coding upstream 493860 14974576 ~ 14979006 (+)
samd9l LOC108278244 coding downstream 8502 15509927 ~ 15520567 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding downstream 21668 15523093 ~ 15534280 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding downstream 47079 15548504 ~ 15566563 (+)
rnf213a rnf213 coding downstream 115858 15617283 ~ 15663689 (+)
trnar-ucu_8 NA coding downstream 311817 15813242 ~ 15813331 (+)
G211540 NA non-coding upstream 1162 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 268208 15203522 ~ 15204658 (+)
G211338 NA non-coding upstream 462215 15010142 ~ 15010651 (+)
G211287 NA non-coding upstream 572560 14899776 ~ 14900306 (+)
G211247 NA non-coding upstream 628304 14844422 ~ 14844562 (+)
G211838 NA non-coding downstream 204324 15705749 ~ 15706001 (+)
G211856 NA non-coding downstream 338347 15839772 ~ 15840000 (+)
G212033 NA non-coding downstream 644954 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 650830 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 652191 16153616 ~ 16154250 (+)
LOC117598752 NA other upstream 481416 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 851078 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1978924 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2027180 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3098494 12367566 ~ 12374372 (+)
G211913 NA other downstream 416792 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 638905 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1585859 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2197248 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2682268 18183693 ~ 18342960 (+)

Expression


Co-expression Network