LOC113528219 (LOC108276187)


Basic Information

Item Value
gene id LOC113528219
gene name LOC108276187
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3057417 ~ 3058956 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916632.2
ATTGAACCAAATGAACGTTGTGTGACACGATGAGGCATCGACGTCACCACAGTTCTGTGACACCAAACAATCACTTCAAATCAAAACACTCCTTCTGAAGTAGAAGGTTTGACATGACTCTGTCTGCTGAAGTCTTTTTCCTGACCCTGTGTCCTCTGTTACTGAGCGCCTATCAAGCTCCCCAGGATAAGGAGGACATCTTTACCACCAGACCATGTCCTGCGTTCCTTGTCTTCGATAACGCGGCGTATGTGGCTGACATGACCGTCGAGCTGCCCTGTCACTGTAAACCAGCAGACGCTCTCTCAGTGGTGTGGTACTATCAGAAACACCTGGGTACAAAGAACGCCAAAGTCCTCACCGACTTCTCGGGCACTGCGATAACGGATTCTTCCAAAGTTGGAGGAGAAGTGAACCTGCGTGACCGTTTTTCAATCCGTTTATTCAGTCTTCTCATCTTCAGGGCTCAGCAGAGCGACTCCGGCCATTATGTCTGCGGCACAGCTTCGGGACAGTTCTTCTATGGCTATGATGTAGACATTCAGGTCACTCGAAATGTTCTCTTTCCCTGGAACCTCGAACAAAGAGCCGAACCCCAAGAAGTCAAATCCAATCCCAATGAGCAGTTTCGAGTGTTCACCAGCTACTGGCCTTGGTCTGTGTGTGATCGGTGTGACGTGCAAGGCGAGCAGGTCCGAGTGGGGCTCTGTTACGTCATGAGTGAATATCTACAAGTGCGCTACCTTCGAGAGGTCAGAAACGTGACCTCATGCGGTTCCTCTGCGGTTCCTCTGCGCTTTGGGCTGAGCGGCGCTGATTATGGAGCCGAGCTCAGCGTCAGAAGTTGTGAATCTCTGCCCCCAAAACCTCCACTTAATCCACAGCGGCAAGCGTTGCTGGAGTTCCTCGGGTACGATCAAGCTTCTCCAGGACTTCCGGTCTACTACCATAACCAGCCAACAAACACCGATCTCGTTCTGTCGTGTCCCAAAGCGAGACCCCAGCACGCAGTGGCGTGGGATAAAGGCTCTACACCGCTTTATCGCTCTCAGTATATGGAGGGAGTGGATACAAACTTGCGTGTGTTTATAGATTTAGGTCACCATCTTCACTTCAGACCTGTGAGAATGGAGGACAAAGGGACATACTACTGCTGGATCCAAGGCAGAAAGGCTGCTGAGATCAGACTCGGGGTGTACACACGACTCGGACGCCAGCGCAGCATCAGCGACCCAGAGTCTGTCTTCGGCCTCAGCGTCATCCTTCTGTGCTACGCCGGCCTCACTGCTGTGTTTCTCCTCATCATATCCATTAGATTCATTTGTGACTTGATCATAGAACGAAGGGCTTCATATTAACTTTCAGTAAATGTATTTGTATCTTCTATTGCCCTGGTGAAACAGTTTAATACTAATTTAGTCAGGATTGTGagtaagaaaatgtaaaacaatatgCAGAACAGCTTTGGAGTTGTGAAACATCATTGCAAATGCACCctaacactgaacacttttaaaaaatgcacacaaaaaaCTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916632.2 True 1538 mRNA 0.49 2 3057417 3058956

Neighbor

gene id symbol gene type direction distance location
abi3a LOC108276098,LOC108434940 coding downstream 2450 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 223563 2789176 ~ 2833854 (-)
rarab rara,LOC108261354,LOC107554136,LOC108434941,LOC107689638,LOC107737746,LOC107695008,LOC107582978 coding downstream 282328 2739238 ~ 2775089 (-)
LOC113528063 LOC108261353,LOC108261342,LOC108276032 coding downstream 656535 2392163 ~ 2400882 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding downstream 681741 2363124 ~ 2375676 (-)
ccdc103 ccdc103 coding upstream 212 3059168 ~ 3063811 (-)
rpl23 RPL23,rpl23,rl23 coding upstream 7789 3066745 ~ 3072827 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding upstream 96025 3154981 ~ 3159263 (-)
LOC113528655 NA coding upstream 96340 3155296 ~ 3155430 (-)
LOC113528657 NA coding upstream 97661 3156617 ~ 3156709 (-)
G204524 NA non-coding downstream 24189 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 86548 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 457065 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 515892 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 555222 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 112306 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 542046 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 558215 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 571738 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 645327 3704283 ~ 3738959 (-)
si:dkey-283b1.6 NA other downstream 17765 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 519306 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 712505 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 861877 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 979940 2065888 ~ 2077477 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 15021 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 323875 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 709899 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 981525 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 1033957 4092913 ~ 4117643 (-)

Expression


Co-expression Network